| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4452 |
|---|
| Symbol | |
|---|
| ID | 5704943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 5031071 |
|---|
| End bp | 5033026 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641273868 |
|---|
| Product | NADH dehydrogenase subunit L |
|---|
| Protein accession | YP_001539217 |
|---|
| Protein GI | 159039964 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
|---|
| TIGRFAM ID | [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.221921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATTC TGGCGAACGC CCCCGTCGAG CCGGTGGGTA CCGTCACGTA CGCGACCGCC
GACGGGCTAC TCGGCAGCGT GTGGCTGCTG GTGGCGATCC CACTGGTCAG CGCGGCGATC
CTGCTGCTGC TCGGCCGTCG GGCGGACCGG TGGGGGCACT GGCTGGGTGT CGCGTCGGTC
GGTGTCGCGT TCCTACTGGG TCTGACCTAC TTCTTCCAGC TGCGTGGCCT GGAGAACCGG
TCCGTCGAGC TGAGCCTGTG GGAGTTCATC GCGGTCGGCG ACCTGCGGGT CGACTTCGGC
CTGCTCTTCG ACCCACTGGC CGCGGTATTC GTGCTCCTGA TCACCGGGGT GGGCTTTCTG
ATCCACCTGT ACGCGGTGGA GTACATGGCC CACGACCCGG GTCGCCGACG GTTCTTCGGG
TACTTCAACC TGTTCGTCGC GGCCATGCTC CTGCTGGTGC TCGGCAACAA CTACGTGATG
CTCTACTTCG GCTGGGAGGG CGTCGGGCTG GCGTCGTACC TGCTGATCTC CTTCTGGTAC
GAGCGGCCGA GCGCCGCCAC CGCCGGTAAG AAGGCGTTCC TGATGAACCG GGTCGGCGAC
GCCGGCCTGG TGATCGGGAT CTTCATCATG TTCGCCACCC TGGGCACCAC ACAGTACGAC
GAGGTCTTCA CCGGTGTCGG GTCGCTGACC GCCACCACGG TCCTGCTGCT CGGTCTGCTT
CTGCTGCTCG GCGCGGCCGG GAAGTCCGGT CAGTTCCCCC TGCAGGCATG GCTTCCGGAC
GCGATGGAGG GTCCGACTCC GGTGTCGGCG CTCATCCACG CGGCCACCAT GGTCACCGCG
GGTGTGTACC TGATCGCCCG GTCGAACCCG ATCTTCTCGG CGAACTCGAC GCTTCAGCTG
GTCGTGGTGA GCGTCGGTGC GTTGACCCTG CTGCTCGGCG CCGTCATCGG GATGGCCAAG
GACGACATCA AGCGGGTGTT GGCCTGGTCG ACGGTCAGCC AGATCGGTTA CATGTTCCTC
GGCGTCGGTC TCGGCGGTGC GGCGTACGCG CTGGCCATCG TGCACCTGCT GGCACACGGC
TTCTTCAAGG CAAACATGTT CCTGGGTGCC GGCTCGGTGA TGCACGGGAT GAGGGACCAG
GTCGACATCC GGCGGTTCGG TGGCCTCGCG AAGTACATGA AGATCACCTG GCTGACCTTC
ATGGCGGGAT GGCTGGCCAT CATCGGCCTG CCACCGTTCT CCGGCTTCTT CTCCAAGGAG
CCGATCATCG TGGCCGCCTT CGAACGCGAT GACTGGACGG CCTGGCTGTT CGGCACGGCG
GCCCTGCTCG GCGCCGGGCT GACCGCGTTC TACATGACCC GGCTGTTCGT GCTCACCTTC
CACGGCCGGC CCCGCTGGAC CGAGGACATC GACCACCCGC ACGAGTCACC GAAGCTGATG
ACGATCCCGC TGGTGCTGCT CGCTGTCGGC TCGGTCGCCG CTGGTGCCCT GTTGGTCGGG
CCGGTCCCGA CGTGGTTGGA GGCGACCGCC GGCCTGGGCG GTCCGGAGCC GGCGCACGAG
GCGGTGCTGT CGCACCTGGC CATCACGATC CTGTCGATCC TGGTAACCGT GATCGGTGCC
GGGCTCGCCT GGTTCCTGTT CCGGGGTGGC ACGGCCACCG AGCCGCAGCC GGCCGGGGTG
CTGGTCACCG CCGCCCGGAA GAACCTCTAC ACCGACGCCG TCAACGAGGC GGTGTTCGAG
AAGCCGGGCA TCTTCCTCAC CCGGGCGCTG GTCTACCTCG ACAACCGGGG CATCGACGGG
CTGGTCAACG CCCTCGCCGC CGGGGTGGGC GGCGGTTCGG GCCGGCTCCG GCGGTTGCAG
ACCGGCTTCG TCCGGTCGTA CGCCACCTCG ATCCTGGCCG GTGCCCTGCT GGTGGTGGCG
GCCTTCCTGG CCGTCGAGGC GGGGTGGCTG GTGTGA
|
|---|
| Protein sequence | MEILANAPVE PVGTVTYATA DGLLGSVWLL VAIPLVSAAI LLLLGRRADR WGHWLGVASV
GVAFLLGLTY FFQLRGLENR SVELSLWEFI AVGDLRVDFG LLFDPLAAVF VLLITGVGFL
IHLYAVEYMA HDPGRRRFFG YFNLFVAAML LLVLGNNYVM LYFGWEGVGL ASYLLISFWY
ERPSAATAGK KAFLMNRVGD AGLVIGIFIM FATLGTTQYD EVFTGVGSLT ATTVLLLGLL
LLLGAAGKSG QFPLQAWLPD AMEGPTPVSA LIHAATMVTA GVYLIARSNP IFSANSTLQL
VVVSVGALTL LLGAVIGMAK DDIKRVLAWS TVSQIGYMFL GVGLGGAAYA LAIVHLLAHG
FFKANMFLGA GSVMHGMRDQ VDIRRFGGLA KYMKITWLTF MAGWLAIIGL PPFSGFFSKE
PIIVAAFERD DWTAWLFGTA ALLGAGLTAF YMTRLFVLTF HGRPRWTEDI DHPHESPKLM
TIPLVLLAVG SVAAGALLVG PVPTWLEATA GLGGPEPAHE AVLSHLAITI LSILVTVIGA
GLAWFLFRGG TATEPQPAGV LVTAARKNLY TDAVNEAVFE KPGIFLTRAL VYLDNRGIDG
LVNALAAGVG GGSGRLRRLQ TGFVRSYATS ILAGALLVVA AFLAVEAGWL V
|
|---|
| |