| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4025 |
|---|
| Symbol | |
|---|
| ID | 5706429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 4576389 |
|---|
| End bp | 4577939 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641273450 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001538806 |
|---|
| Protein GI | 159039553 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000068225 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGGGTTGGC TGGACCGCGT CGGCGACCAG GTCGACACCC TGACACAGGC ACGCGGCCTG
CAGGAGTCGA GCCGCTCCGC CGAGGCGTAC CGGATCCTCA CTGGCGTACT CACCACCACC
ACCGACCGGT ACGCGCGTGC CGACGCCCTG GTGCAACGCC TCTCGGCGTT GCTCAACCTG
GGCCGCACCG CGGAATACAC CCGGGCCATC GAGGAGGCCA CCACCGCGGT CCGAGACATC
GCCGAGCCGT ACCCGCACGG CCACCTCCAC GCGCTCGCCG CCCTCGCCGC CCACCACCAG
GGTGCGCTGG ACCGCTGCGT CATGCATCTG GTACGGGCCG CTCGTGCGCT GGGGGCCGTC
GAGGATACCG ACCGAGACAC CGCGTGGGGC TGGCACGACC TCGCAATGGC CTACTCCTAC
CTCAGCTTTC ACGGGTACGC GCTGGGCGCG ATCGAGCGAG CACGGCAGCT CGGGCTCGCC
GCCGGCATCC CGGAGGAGAC CTTCGCCGCC CCCGGCATCC GGCTACGCAA CGCCGTCGCG
CTGGACCACA CCGGCGACAG CGACGGCTGC CTGCGGGTGC TCCGCGACGT GGCCGGGGAC
CTGGGGCAGT TCCTGCGCGC CGGACGGGCC AGCCGACTGC GCCCGAGCAG CCTCGCCGCG
TACGGTTACG CCGCCGCGCG GCAGGCCGCC CTGGGCGACC GGTTGGCGGT GGGAACAGAC
GGTGCCCCGG CTCGACTGCT GAGCCACGGC GCCGACAGTG CCCGAGCTCG GGACATGCGC
CAACTCGGCG AGGTCTGCCT GGCCATCGCG GACGACCGTC CGATCGAGGC GGTCACCCGG
CTGGACACCG TACGGGTGTC CACCGAGACG CTGGGCGCGG CCGAGCCCGC CCGGCTACGC
AGCATCGCGC TGAGCCGGGC CGGGGAGCAC GCCGCCGCGC ACCGGGCCGA CCGGCGGGCG
TTCCGGCTCG CCGCGCAGCG CAACGATCGG CTCCGGGACG TCTACATCGA CGGGATCGCC
GCCCGGATCG ACCACGAGGA GATGCGTCGC GAGGCAGCCC GCTTCGAGGG CGAGGCACTC
ACCGATCCGC TGACCGGGCT ACCCAACCGG CGCCGGTTGG AGCGACACAT CGCCGCCGTG
ATGGCCCAGG GCGAACGGGT GGTGATCGGC GTGTGCGACC TGGACGGTTT CAAGGCGGTG
AACACACACC ACGGGCACCA CTCCGGTGAC CTGGTGCTGC AACGGGTCGC CGGCGTGGTC
AACCGGATGA TGCGGCGAAA CGACTTCGTG GCCCGCTACG GCGGCGACGA GTTCGTCGTG
GTGCTGCTCG GCACCGGCAT CGACGAGGCG GACGAGGTGG CACGCCGGAT CGAGTCCGCC
ATTCGGACCG AGGACTGGGA ATCCCTCGTA CCCGGCACCC CCGTCGGAGT CAGCATCGGC
TTCGCCGAGG TGGCTGCCAC CGGGCCCGAC GTTCAGGACG CCCTGAGCAC CGCCTTCGAG
GTCGCCGACC GGGAGATGCT CCGCGCGAAG ACCCGTCCCC GCGCGTCCTG A
|
|---|
| Protein sequence | MGWLDRVGDQ VDTLTQARGL QESSRSAEAY RILTGVLTTT TDRYARADAL VQRLSALLNL
GRTAEYTRAI EEATTAVRDI AEPYPHGHLH ALAALAAHHQ GALDRCVMHL VRAARALGAV
EDTDRDTAWG WHDLAMAYSY LSFHGYALGA IERARQLGLA AGIPEETFAA PGIRLRNAVA
LDHTGDSDGC LRVLRDVAGD LGQFLRAGRA SRLRPSSLAA YGYAAARQAA LGDRLAVGTD
GAPARLLSHG ADSARARDMR QLGEVCLAIA DDRPIEAVTR LDTVRVSTET LGAAEPARLR
SIALSRAGEH AAAHRADRRA FRLAAQRNDR LRDVYIDGIA ARIDHEEMRR EAARFEGEAL
TDPLTGLPNR RRLERHIAAV MAQGERVVIG VCDLDGFKAV NTHHGHHSGD LVLQRVAGVV
NRMMRRNDFV ARYGGDEFVV VLLGTGIDEA DEVARRIESA IRTEDWESLV PGTPVGVSIG
FAEVAATGPD VQDALSTAFE VADREMLRAK TRPRAS
|
|---|
| |