| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1327 |
|---|
| Symbol | infB |
|---|
| ID | 5708132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 1534083 |
|---|
| End bp | 1537070 |
|---|
| Gene Length | 2988 bp |
|---|
| Protein Length | 995 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641270838 |
|---|
| Product | translation initiation factor IF-2 |
|---|
| Protein accession | YP_001536219 |
|---|
| Protein GI | 159036966 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0335521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAGGCA AGGCCCGCGT ACACGAGCTC GCGAAGGAGC TCGGGGTCGA AAGCAAGACC
GTTCTCGCCA AGCTCAAGGA GATGGGCGAG TTCGTGAAGT CCGCGTCCAG CACCGTTGAG
GCGCCGGTCG CCCGACGGCT GCGTAACGCG TTCGTCAACA ACGCCGGCTC GCCAGCGCCG
GCCGCCCCGC CGGCGGTTGC CCCGCCGACC CCGACCCCAA CCCCTCCCCG GACCCCGACT
CCGGCGCCAC CCCCGGGTGG ACCCCGCGTG TCGGCAAAAC CCATGCCGCC GCGGCGGCAA
GGTGTCCCGA CTCCCGGCCC GAAGCCCAAG GGTCCGGTGC CGGGTCCGCC GCAGTCCGCG
ACGCCGGTCA CCAAGCCGGC GAGCGCCCAC GACATCGAGG TGGCGGCCGC CGAGGCGCGT
GCCGCCGCGC TGAAGGCCGA GCAGGAGGCC GCGGTCAAGG CCGCACAGGC TGCCCGGCAG
CAGCAGCGGG AAAACGTCCG GCGGGAGCCG CCCACCGAGG GTGGTCCGCG CCCGGGTCCC
CGTCCCGGCC CCGGCACGAT GCCGCCCCGG CCCGGTTCCC CGGCCGCCGG ACGCTCCGGT
GCGCCTGCTC CGGGGCCCGG CCCCCGGCCC GGTGGTCGTC CGCCGGCGCG TGGCGCCGGT
AACAACCCGT TTGGCATTCA GGGTGGCCAG CAACGTCCGC CGGCTGCCGG CGCGGGTGGT
CCGCGGCCGA GTCCGGCGTC GATGCCGCCG CGGCCCAGCC CCGCGTCCAT GCCGCCGCGG
CCGAGCCCGG CGTCCATGCC GAGCCAGCGG CCCGGCCGCC CCGGCGGTCC CGGTTCCGGT
CGCCCAGGCT CGGGCGCCGG TCGCCCGGGT GGCGGTGGCG GTGGCGGTTA CCGCGGCGGT
GGCGGCGGTG GCGGTGGCGG TGGTTACCGC GGCGGCCCCG GCGGTGGCGG TGGCGGCGGC
GGTGGGTTCC GCGGCGGCCC CGGTGGCGGT GGCGGTGGGT TCCGCAGCGG CCCCGGTGGC
GGCGGCCGTC CCGGTGGCGG TGGCCGTGGT CGCGGTGGCG GCGCCGCAGG TGCCTTCGGG
CGTCCAGGTG GCCGGCCGAC CCGTGGCCGC AAGTCGAAGA AGCAGCGCAG ACAGGAGTTC
GACAACCTGT CCGCGCCGAC CATGTCCTCG GGCGCACCCC GTGGGCAGGG CCAGGTCGTC
CGGCTGTCCC GGGGCGCCTC CCTGTCGGAC TTCGCCGACA AGATCAATGC CAATCCGGGT
TCTTTGGTCC AGGAGATGTT CAACCTGGGC GAGATGGTGA CCGCGACCCA GTCCTGCTCC
GACGACACCC TGCTGCTGCT GGGTGAGCAC CTGGGCTTCG CCGTCCAGAT CGTCAGCCCG
GAGGACGAGG ACCGCGAGCT GCTCGCGCAG TTCAACATCG ACCTGGACGC CGAGGTGGCG
GAGGACCGGC TGGTCAGCCG GCCGCCGGTG GTGACCGTCA TGGGTCACGT CGACCACGGT
AAGACGAAGC TGTTGGACGC GATCCGTAAG GCGAACGTCG TGGCCGGTGA GGCGGGTGGC
ATCACCCAGC ACATCGGTGC CTACCAGGTC CACGTCCCGC ACGACGGCGA GGACCGGGCG
ATCACCTTCA TCGACACTCC CGGTCACGAG GCGTTCACCG CCATGCGTGC CCGAGGCGCT
CAGGTCACCG ACATCGTGAT CCTGGTCGTC GCGGCCGACG ACGGGGTGAT GCCGCAGACG
ATCGAGGCGT TGAACCACGC CAAGGCGGCC GAGGTGCCGA TCGTGGTGGC GGTCAACAAG
ATCGACAAGC CGGAGGCCAA CCCGGACAAG GTCCGTCAGC AGCTGACCGA GTACGGACTG
GTCGCCGAGG AGTACGGCGG CGACACGATG TTCGTCAACG TGGCTGCCAA GCCGGGTACC
GGCATCGAGA GCCTGCTCGA GGCCGTGCTA CTGACCGCGG ACGCGTCGCT GGAGCTGACC
GCTCCGACGG ACGGGCCGGC GCAGGGTGTG GCGATCGAGG CCCACCTGGA CAAGGGCCGG
GGCGCGGTGG CGACGGTGCT GGTGCAGAAG GGCACCCTGC GGGCGGGCGA CTCGATCGTC
GCCGGTGGGG CGCATGGTCG GGTCCGGGCG ATGCTCGACG AGAACGGCAA CCAGGTCGCC
GAGGCGGGCC CGTCCCGTCC GGTACTGGTG CTGGGTCTGA CCGCGGTCCC GGGCGCGGGC
GACACGTTCC TGGCCGCTGA GGACGACCGC ACCGTGCGGC AGATCGCCGA GCAGCGGCAG
GCGCGGCGGC GGGCGGCGGC GTTCGCCAAC TCCCGTGGCC GGGCCACCCT CGAAACGCTC
ATGGAGCAGC TCAAGGCGGG CGAGAAGACC TCGCTCAACC TGGTGCTCAA GGGCGACGTC
TCCGGTTCTG TGGAGGCGCT CGAGGACGCC CTGTTCAACC TCGACATCCC CGAGGAGGTC
CAGCTGCGGA TCATCCACCG GGGCGTCGGT TCGATCACCG AGAGCGACGT CATGCTCGCG
AGCGCCTCGT CGGAGGCGGT CACGATCATC GGCTTCAACG TCCGGGCCGC GAACAAGGTC
CGCGAGATGG CCGACCGCGA GGGCGTGGAG ATTCGGTACT ACACCGTCAT CTACCAGGCC
ATCGAGGAGA TCGAGGCAGC GCTCAAGGGC CTGCTCAAGC CGGAGTACGA GGAGGTCGAG
CTGGGCACCG CGGAGGTCCG CGAGGTGTTC CGTTCGTCCA AGGTCGGCAA CATCTCCGGC
TGCATCGTCC GGTCGGGCCT CATCCGGCGC AACGCCAAGG CCCGGCTGCT GCGCGACGGT
GCGGTGGTGG CGGACAACCT CACCATCGGC TCGCTCAAGC GGTTCAAGGA CGACGCGACC
GAGGTACGCG AGGGCTTCGA GTGTGGTCTG ACCCTGGGTG GCTACAACAA CGTCCAGGTC
GGCGACGTGA TCGAGACCTT CGAGATGCGG GAGAAGGCAC GCGCCTGA
|
|---|
| Protein sequence | MAGKARVHEL AKELGVESKT VLAKLKEMGE FVKSASSTVE APVARRLRNA FVNNAGSPAP
AAPPAVAPPT PTPTPPRTPT PAPPPGGPRV SAKPMPPRRQ GVPTPGPKPK GPVPGPPQSA
TPVTKPASAH DIEVAAAEAR AAALKAEQEA AVKAAQAARQ QQRENVRREP PTEGGPRPGP
RPGPGTMPPR PGSPAAGRSG APAPGPGPRP GGRPPARGAG NNPFGIQGGQ QRPPAAGAGG
PRPSPASMPP RPSPASMPPR PSPASMPSQR PGRPGGPGSG RPGSGAGRPG GGGGGGYRGG
GGGGGGGGYR GGPGGGGGGG GGFRGGPGGG GGGFRSGPGG GGRPGGGGRG RGGGAAGAFG
RPGGRPTRGR KSKKQRRQEF DNLSAPTMSS GAPRGQGQVV RLSRGASLSD FADKINANPG
SLVQEMFNLG EMVTATQSCS DDTLLLLGEH LGFAVQIVSP EDEDRELLAQ FNIDLDAEVA
EDRLVSRPPV VTVMGHVDHG KTKLLDAIRK ANVVAGEAGG ITQHIGAYQV HVPHDGEDRA
ITFIDTPGHE AFTAMRARGA QVTDIVILVV AADDGVMPQT IEALNHAKAA EVPIVVAVNK
IDKPEANPDK VRQQLTEYGL VAEEYGGDTM FVNVAAKPGT GIESLLEAVL LTADASLELT
APTDGPAQGV AIEAHLDKGR GAVATVLVQK GTLRAGDSIV AGGAHGRVRA MLDENGNQVA
EAGPSRPVLV LGLTAVPGAG DTFLAAEDDR TVRQIAEQRQ ARRRAAAFAN SRGRATLETL
MEQLKAGEKT SLNLVLKGDV SGSVEALEDA LFNLDIPEEV QLRIIHRGVG SITESDVMLA
SASSEAVTII GFNVRAANKV REMADREGVE IRYYTVIYQA IEEIEAALKG LLKPEYEEVE
LGTAEVREVF RSSKVGNISG CIVRSGLIRR NAKARLLRDG AVVADNLTIG SLKRFKDDAT
EVREGFECGL TLGGYNNVQV GDVIETFEMR EKARA
|
|---|
| |