| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1082 |
|---|
| Symbol | |
|---|
| ID | 5704073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 1214680 |
|---|
| End bp | 1215594 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641270597 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001535981 |
|---|
| Protein GI | 159036728 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000815548 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGC TCATCAACCG TCCCACCGGC GACCCGGCCC AGACGTCGGC CCCGTCGCCG
AGACGACGGC GTCGCGGGTC GGGTTTCGGC ACCATGCGGC GGCGCGAGAA GCTGCTCCGG
TACGCACTGC TGCTGCTGGC GCTGGTGGTG ACCGTCGGGC CGTTCGTGTG GCAGCTGTCC
ACCTCCTTCA AGGGCGCCGG CGAGAACATC TACACCACGA CCCCGCAGTT CCTCCCGTCC
GACCCGACGA TCGACAACTA CCTGCGGGTG ACCGAGACGA TCCCCGTCTG GTCGTATGCG
AAGAACTCGC TGATCGTGGC GTTCCTGGCG GTGTTCGGTA ACGCCGTGGG CGCCACCCTC
GCCGGGTTCG CCCTCGCCAA GCTGCACTTC CGGGGCCGGA CGCTGTTTCT CGCGTTGGTA
CTCGGCACGC TGGTGCTGCC CGTCGAGGTG ACGATCATCT CCCAGTATGT GACGGTCCGT
AGTCTGGGCC TGGCCGACAC GTTGCTGGGT GTGGCGCTGC CCGGCGCCGT GGCCATGTTG
AACGTGCTGC TGATGCGCGC GGCGTTCATG GCGATCCCCA CCGAGATGGA CGAGGCGGCG
GTGATCGACG GTGCGACGGC GTGGCAACGG CTGGTCCACG TCGGGCTACC CAACGTACGG
GGGATGCTCA GCGTCATCAC GATCTTCGCG TTCATCGGCG CATGGGACGA CTTCCTCTGG
CCGCTGATCG TGTTGACCGA CCCGAAGAAT TACACCCTCA CCGTCGGCCT GCAGTACCTC
AGCGGGGCTT TCACCGCGAA CCCGCGGGTC ATCGCGGCCG GCACGATGAT CGCGTTCATT
CCCATCGTCA TTGTCTTCGC GACACTGCAA CGGTTCTTCT TCCGCGGTGT CGAGGAGGGC
GCGATCAAGG GGTAA
|
|---|
| Protein sequence | MTQLINRPTG DPAQTSAPSP RRRRRGSGFG TMRRREKLLR YALLLLALVV TVGPFVWQLS
TSFKGAGENI YTTTPQFLPS DPTIDNYLRV TETIPVWSYA KNSLIVAFLA VFGNAVGATL
AGFALAKLHF RGRTLFLALV LGTLVLPVEV TIISQYVTVR SLGLADTLLG VALPGAVAML
NVLLMRAAFM AIPTEMDEAA VIDGATAWQR LVHVGLPNVR GMLSVITIFA FIGAWDDFLW
PLIVLTDPKN YTLTVGLQYL SGAFTANPRV IAAGTMIAFI PIVIVFATLQ RFFFRGVEEG
AIKG
|
|---|
| |