| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3442 |
|---|
| Symbol | |
|---|
| ID | 5712500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3626001 |
|---|
| End bp | 3627206 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641269371 |
|---|
| Product | major facilitator superfamily (MFS) transporter |
|---|
| Protein accession | YP_001534776 |
|---|
| Protein GI | 159045982 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACTT CCGGATTCCT TCGTCAAAAC GCCCGTTGGC TAGGCGCCGG GGGGCTACTG
GCGTTCTCCG GCAGCTATGG GCAGACCTTT TTCATCGCCA TCTTCGCCGG CGACATCCAA
GAGAGTTTCG GGCTGAGCCA CGGCGCGTGG GGCGCCATCT ATGCACTGGG CACACTGGGC
TCTGCTGCGG TCATGGTCTG GCTCGGCACC CTGACCGACC ATTATCGCGT CCGCCGCCTT
GGGCCCTGGG CGCTTGCAGG CCTTGCTGCG GCCTGCCTGG CCATGGCGGT CAACCCTTGG
GTCTGGGCCC TTCCACTGGT GGTGTTCGGC TTGCGTCTCG GCGGTCAGGG TATGGTGACC
CATGTGGGCC GCGTGGCTAT GGCGCGCTGG TTCTCAGCCA ATCGCGGAAA GGCGATATCC
GTGTCTTCGC TTGGGTATTC GGTGGGCGAA GCGTTTCTTC CGATCCTGTT CGTGGCGCTT
TTGACCGTCG TCGAGTGGCG CGCGCTCTGG GGTCTTGCAG CCTTGCTGAG CCTCGCGGCC
ATCCCGGTGC TTCTGGCCCT TTTGCACCGC GAACGCCAAC CGCAAAGCTA TGCCGAAGAC
AGTCAGAGTA CTGGTTCGGG CGGCCGCCAC TGGACCCGGG CAGAGGTCGT GCGAGCACCT
TTCTTCTGGG CGATTGTACC CGCACTTCTG TCGACGCCCG CCTTCGTGAC CGCATTCTTT
TTTCAACAAG TCCATCTGGC GGCGGAAAAG GATATCGCCC ATCTCGATCT TGTCGCGCTT
TTTCCGCTCT ATTCGGTGGT CTCGGTTCTC GCGATGCTGG GCACGGGATT TCTCGTGGAC
CGGTTCGGCA CACGTCTCCT GATGTGCCTG TTCACCCTAC CCTTGGCACT GAGCTTCATC
GTCATATCAG GCACCGAAAC CCTCTTGGGC CTCGCGGTCG GGCTAAGCCT TCTGGCGGTT
ACGGTCGGCG CGAATAACAC ACTGCCCGCG GCCTTTTGGG CGGACATGTT CGGGACCCGC
CATCTCGGCG CGATCAAATC GGTCGCCATG GCCCTTATGG TTTTGAGTTC CGCGATAGGG
CCGCTGATTA CCGGTCTGGC CATCGATGCA GGGGCGTCCT TCCCTGCGCA AATGCCCTTG
ATCAGTCTCT ATATCGCCCT CTCAGCCGGG CTGCTCGCCG CCGCTCTGTG GCGTACGGGA
GCCTAA
|
|---|
| Protein sequence | MTTSGFLRQN ARWLGAGGLL AFSGSYGQTF FIAIFAGDIQ ESFGLSHGAW GAIYALGTLG
SAAVMVWLGT LTDHYRVRRL GPWALAGLAA ACLAMAVNPW VWALPLVVFG LRLGGQGMVT
HVGRVAMARW FSANRGKAIS VSSLGYSVGE AFLPILFVAL LTVVEWRALW GLAALLSLAA
IPVLLALLHR ERQPQSYAED SQSTGSGGRH WTRAEVVRAP FFWAIVPALL STPAFVTAFF
FQQVHLAAEK DIAHLDLVAL FPLYSVVSVL AMLGTGFLVD RFGTRLLMCL FTLPLALSFI
VISGTETLLG LAVGLSLLAV TVGANNTLPA AFWADMFGTR HLGAIKSVAM ALMVLSSAIG
PLITGLAIDA GASFPAQMPL ISLYIALSAG LLAAALWRTG A
|
|---|
| |