| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3388 |
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| Symbol | |
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| ID | 5712446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3566584 |
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| End bp | 3568110 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641269317 |
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| Product | polysaccharide chain length determinant protein |
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| Protein accession | YP_001534722 |
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| Protein GI | 159045928 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGATA TGCGGTACTA CACATCCGTC TTGTTGCGCC GCTCGCCGTT ACTGATCGTG
GTCACCGGCG TCTGCGCAGT GTTATCTGTA CTAGTCGCTC GTGAGTTACC CGCAAAATAC
GAAGCCTCGG CAAGACTGTT GGTCGAATCG GCCCAGATCC CGGATCAGCT GGCGATGTCG
ACAGCAACTA CCGGCGCGCA GGAGCAGCTG GAAATCATCC AGCAAAGGCT GCTGACGCGG
GCCAATCTGC TCGATATAGC AAACCGGTTC GAAGTGTTTC CCGACATTAG GTCGATGAGC
CCGGATGAAG TCGTCCGTAG CATGCGGAGC AACACGCGCA TAAACCTGAC ATCCGGTCGT
GATCGCGCGA CACTCATGAC GATCTCCTTC ACCGATGATC GTCCTGTGAC GACGTCGGAC
GTTGTGAATG AGTACATCAC TCTGATCCAG CGTGAAGATA GCCGCCTCAG AACCAGCCGC
GCGTCGGAGA CCGAGCAGTT CTTCAAACAG GAAGTCGATC GGCTCGCCGT TCAACTTGAC
GAGAAAAGTG CCGCGATTCG ACAGTTCCGC TCCGAAAACT CCGATGCTCT CCCCGAAACG
TTTGAGTTTC GGCTTGAACG GTTAGCGGGT TTGCAGGAGC GATCCACAGC CTTCACCAGG
GACCTACTCA TCCTAAAAGA ACAGCGTCAG CAACTCAAAG AAGCTTTGGA CGGTTTGCGG
ACCGGGTTGC CCGAAGACGC CACGGAAGAG CTTTCTCAAG AAGAAGAAAA GCTCGTGGAT
CTCAGACGAG AGCTTGTGGA GGCAATGGAA ACTGCGGGCG AAACCGCACC GCGGGTTCGA
ATTCTGCAAT CCCGGATCGC CCAGGTCGAG CGGGTCATTC AGTCGCTCGG CGGCATCACG
GCGATCGAGA ACCCGACCCA GACTCTTCAG GCGCAGATTG AACAGATCAA CGCGCAGATC
GGGTTCTTGG AGGAGCAGCT TGGCACCACC CAATCCCAAA TTGAAGACGT GGAAGCCACG
CTCGATCTGA CACCTGGCAT CTCGGTGTCT TTGGAGTCCT TGCAACGGGA CTACCAAAAC
GTTCAGGAAC AGTACAACTC CGCGGTAGAG CGACTGGCGA TTGCGCAAAC CAGTGAGCGT
ATAGAATTGG CATCACGCGG CCAGCGCATC ATCGTTCTCG AACAGGCTGC GACACCGACT
GACCCGTCGA GCATGCCACC ACTTCTTGTC GCTGCCGGAG GTACCATCGG CGGTTTCTTT
CTGGCTCTGG GGTTGGCAAT CCTCCTGGAG GTCATGAGCA AGACGATCCG CCGACCTAGC
GACCTGACCA AAGGTCTTGG CATTGTGCCG CTGGCGACAC TCCCTTACGT CAAGACGAGC
CGTGAGATCG TTTTTGAACG GGTGGCCAAA GTTGCAATTA TTCTCGTGAT CGTCACCGGC
ATTCCGGCGA TGCTCTACGC GGTCCATATG CTTTATCTGC CTTTGGATCT GCTCGCCGAC
AGGATCCTGA CGCGCATTGG TGTCTGA
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| Protein sequence | MFDMRYYTSV LLRRSPLLIV VTGVCAVLSV LVARELPAKY EASARLLVES AQIPDQLAMS
TATTGAQEQL EIIQQRLLTR ANLLDIANRF EVFPDIRSMS PDEVVRSMRS NTRINLTSGR
DRATLMTISF TDDRPVTTSD VVNEYITLIQ REDSRLRTSR ASETEQFFKQ EVDRLAVQLD
EKSAAIRQFR SENSDALPET FEFRLERLAG LQERSTAFTR DLLILKEQRQ QLKEALDGLR
TGLPEDATEE LSQEEEKLVD LRRELVEAME TAGETAPRVR ILQSRIAQVE RVIQSLGGIT
AIENPTQTLQ AQIEQINAQI GFLEEQLGTT QSQIEDVEAT LDLTPGISVS LESLQRDYQN
VQEQYNSAVE RLAIAQTSER IELASRGQRI IVLEQAATPT DPSSMPPLLV AAGGTIGGFF
LALGLAILLE VMSKTIRRPS DLTKGLGIVP LATLPYVKTS REIVFERVAK VAIILVIVTG
IPAMLYAVHM LYLPLDLLAD RILTRIGV
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