| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3218 |
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| Symbol | cas5 |
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| ID | 5712274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3387476 |
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| End bp | 3388162 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641269145 |
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| Product | CRISPR-associated protein Cas5 family |
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| Protein accession | YP_001534552 |
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| Protein GI | 159045758 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01868] CRISPR system CASCADE complex protein CasD/Cas5e
[TIGR02593] CRISPR-associated protein Cas5, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.960254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGGGA CCGACACACG CTGGCTCGTT TTACGCTTGA GCGCGCCGAT GTTGTCCTTC
GGGAGGGTCT CTATCGACCA GGTCGGCCCC ACCGCGCGCT GGCCTGGGTC GTCAATGCTG
ACAGGGCTTC TCGCCAATGC GCTCGGCTGG GACTGGGACG ACAGAGCTCG ACTCCAGGCG
CTGCAGGACC GGCTGCGCTT TGGCGCGCTG ATCCTGCGCG AGGGCGACAC CCTGACCGAC
AGCCAGAACG CTCAGCTCGC CAAGGCCGAT CGGGGCTGGA CAACGCGCGG CGCGCCGGAG
GGCCGGGCCG GGGCAAGCTA CGACGCGCCT CACAGGCGGC GGCGCGATTT CCTCATGGAT
GCGGAGTATA GGGTCGTCCT GACGCTTGCC CTCGCCGAAG CCGAGCCGAC CCTCGACCGT
ATCGGCGCCG CGCTGGACCG ACCCGCGCGG CCGCTCTTTC TTGGGCGCAA GCCATGCCTG
CCGACACGAC CCCTGCGCGC GGGCGAGGTC CGGGGCGCAA CCGTATATGC GGCGCTCGCC
GAACTGAACT GCGCAACGCC CTGCCCAGCT GCCTGGCCCA AGGACGACGG CCCGGACGGG
CACCGCGTGC ACGACGTGGC CGACACACGG GTCTGGTCCA GCGGGCTGCA TGGCGGCACT
CGCGCCTTGG TGGAGGGGAC ACTGTGA
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| Protein sequence | MSGTDTRWLV LRLSAPMLSF GRVSIDQVGP TARWPGSSML TGLLANALGW DWDDRARLQA
LQDRLRFGAL ILREGDTLTD SQNAQLAKAD RGWTTRGAPE GRAGASYDAP HRRRRDFLMD
AEYRVVLTLA LAEAEPTLDR IGAALDRPAR PLFLGRKPCL PTRPLRAGEV RGATVYAALA
ELNCATPCPA AWPKDDGPDG HRVHDVADTR VWSSGLHGGT RALVEGTL
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