| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3213 |
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| Symbol | |
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| ID | 5712269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3379874 |
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| End bp | 3381040 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641269140 |
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| Product | integrase family protein |
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| Protein accession | YP_001534547 |
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| Protein GI | 159045753 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAG TAAAACTGAG CAAGAAACTC GTCGAGAGTG CAGCCGCGGG TGACGGCGAC
GAGGTGTTCT GGGACACCGC TCTGCCCGGC TTTGGTTTGC GCGTCAAAAG CAGCGGGTCG
AAAAGTTACG TGGTCCAGTA TCGCAACCGT CAGACCGGGC GCTCACGGCG CAAGACGATC
GGCCAGCACG GTCCGCTGAT GACCCTGTAC CAGGCGCGCG AGATCGCGCG TGGATATCTT
GCGGACGCGC TGCGCGGCGG CGACCCCGTC ATGGAGGCGC AGGCGCGGCG GAAGGCGAAG
TCGATGCGAG ACCTCGCGGA TGACTACATG ACCAACCATG CGCTCCCCAA GAAGCGGCCC
CGCAGTGCGG CCATGGATCG ATCTTTGCTG GATCGCGTGG TCCTTCCCGC ATTCGGTCGA
CAATCGGTGG ATGAGGTGAG CCACAAGGAC ATTCAGCGGC TCCACAACAG CCTCCGTGAC
ACGCCCTACC AGGCCAATCG CGTCCTCGCG TTACTGTCCA AGATGTTCGA ACTGGCGATC
CGGTGGGGTC TGCGCGGCGA CAACCCGGTG AAGGGCGTCC CGCGGTTCGC GGAGGAGAAG
CGGTATCGAT GGCTGTCCGA TAATGAACTG GACCGCCTGC GTGAAGCCTT GGATGCGCAC
CCAAATCAGC GCGCCGCGAA TGCCATACGT CTTCAATTGC TGACCGGCGC CCGTACCGGC
GAGGTTCTCA CATCACAGTG GTCAGACTTC GATCTTGACC GCGGTGTCTG GGTGAAGCCC
TCTCATCACA CGAAACAGAA GCGCACGGAG CACCTGCCAT TGTCGGCAGC GACCGTGGCG
CTCCTGCGAT CCATTGCGCA TGGACGGACC GACGACAGCC CTTTCGTTTT CCCGGGCCGG
AAGCCCGGTC ATCCCATCAA GGACCTGAAG CGCTTCTGGA CATCGGTCAC CAGCACTGCC
GGGCTCAAAG ACTATCGCCT CCACGACAAC CGGCACACCC ACGCGTCCCA TTTGGTCTCT
AGTGGGCATA GCTTGCCCAT TGTTGGGCGC CTTCTTGGCC ACACCAACCC TATGACGACA
CAGCGCTATG CGCATCTGGC AGATGATCCT TTGCGGCAGG CGGCCGAAGT GATGGGTCAG
AAGCTGACGA ACACGGAAAA AAAATGA
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| Protein sequence | MPKVKLSKKL VESAAAGDGD EVFWDTALPG FGLRVKSSGS KSYVVQYRNR QTGRSRRKTI
GQHGPLMTLY QAREIARGYL ADALRGGDPV MEAQARRKAK SMRDLADDYM TNHALPKKRP
RSAAMDRSLL DRVVLPAFGR QSVDEVSHKD IQRLHNSLRD TPYQANRVLA LLSKMFELAI
RWGLRGDNPV KGVPRFAEEK RYRWLSDNEL DRLREALDAH PNQRAANAIR LQLLTGARTG
EVLTSQWSDF DLDRGVWVKP SHHTKQKRTE HLPLSAATVA LLRSIAHGRT DDSPFVFPGR
KPGHPIKDLK RFWTSVTSTA GLKDYRLHDN RHTHASHLVS SGHSLPIVGR LLGHTNPMTT
QRYAHLADDP LRQAAEVMGQ KLTNTEKK
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