| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3177 |
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| Symbol | nirF |
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| ID | 5712233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3339414 |
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| End bp | 3340580 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641269104 |
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| Product | cytochrome cd1 |
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| Protein accession | YP_001534511 |
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| Protein GI | 159045717 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.976412 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTACGCC CCATCGCCTC GACCCTGCTG TTCCTGACTT TGCTCTTTGC GTTCTGGTTC
AACCAGGCGC TCGCCTCGGA ACCCCGCAGC ACCGCCGGGC TGGGCGTGGT GATCGAACGC
GCGACGGGCG CTGTCCTGAT CGTCGACCGC AGCACCCACA CGGTGCTCGA CCAGGTGGAG
GGGTTCGGAG ACCTCTCCCA CGCTTCGGTC GTGTTTTCCG ATGACGGGCG GTATGCGTTC
GTTTTCGGGC GCGATGGGGG TCTGACCAAG CTCGACCTGC TGACCGGACA GATCGTGGGC
CGGGTGATCC AGTCGGGCAA TGCCATCGGC GGCGCGATCT CCGATGATGG CACGCTGGTC
GCCGTGGCCA ATTACGAGCC GGGCGGCGTG CGCATCTTCG ACGCGGATAC CCTCGAGCAC
GTGGCCAGTT TCGACACCGG GGCCAAGACC ATCGGCCTCG TGGATGTCCC CGGTCGGCGG
TTTGCCTTCA CCATGTGGGA CAGCGGCGAG ACCTGGCTGG TGGACATGAA CCAGCCGGAC
CCCGAGCCGC TGATCATAGC CGGTATGGGC GAGAACCCCT ATGACGCGCT GATCACCGGT
GATGGCCGCA CCTATATCGC CGGGCTGTTC GGCGAAGACG GGCTGAGCCT GCTGGACCTG
TGGGAGGCCG AGCCCACCCC GCGCCGCATC CTGCCCGGCT ACGGTCGCGG CGAGGAACCG
CTGCCGGTCT ACAAGATGCC CCATCTCGAA GGCTGGGCAC TTGCCGGGGA TCGCTTCGCG
CTTCCGGCTG TCGGCCGTCA CGAGGTGCTC TGGCTTGATT CCCGCAGCTT CGAGGAAGTC
GGTCGCACGG CGACCCACGG CCAGCCGGTC TTCGCCGTCG CACGCCCCGG AGGGCGGCAG
GTCTGGGTGA ACTTCGCGCA TCCGCTCAAC GACACGATCC AGGTGCTCGA TACCGCGACC
GGCGACGTCA TTCACAGCTT CCAGCCTGGC CCGGCGATCC TGCACATGGA ATTCGCCCCA
CGCGGCAACG AGGTGTGGGT GTCCGTCCGC GACGCCGGAA AGGTGCTGAT CTACGACACC
GAGACCTTTG CGCTGACGGG TGAGATCGCG GCGGAGAGCC CCTCGGGCAT CTTCTTCACC
GCGCGCGCTC ACCGGATAGG ATTGTGA
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| Protein sequence | MVRPIASTLL FLTLLFAFWF NQALASEPRS TAGLGVVIER ATGAVLIVDR STHTVLDQVE
GFGDLSHASV VFSDDGRYAF VFGRDGGLTK LDLLTGQIVG RVIQSGNAIG GAISDDGTLV
AVANYEPGGV RIFDADTLEH VASFDTGAKT IGLVDVPGRR FAFTMWDSGE TWLVDMNQPD
PEPLIIAGMG ENPYDALITG DGRTYIAGLF GEDGLSLLDL WEAEPTPRRI LPGYGRGEEP
LPVYKMPHLE GWALAGDRFA LPAVGRHEVL WLDSRSFEEV GRTATHGQPV FAVARPGGRQ
VWVNFAHPLN DTIQVLDTAT GDVIHSFQPG PAILHMEFAP RGNEVWVSVR DAGKVLIYDT
ETFALTGEIA AESPSGIFFT ARAHRIGL
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