| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3176 |
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| Symbol | nirD |
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| ID | 5712232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3338414 |
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| End bp | 3339409 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641269103 |
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| Product | nitrite reductase heme biosynthesis D protein |
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| Protein accession | YP_001534510 |
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| Protein GI | 159045716 |
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| COG category | [K] Transcription |
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| COG ID | [COG1522] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGG CTGAAATCTC TCTCGACGAT CGGCTACTGA ACGAGTTTCA GCGCAACGTA
CCCGTGGTCG CGCGTCCCTT TGCCGAGATC GCCAAGTCCG TGGGCACGAC CGAAGACACC
GTCCTCGCCC GGATGCAGGC GCTCGTGGCG CGCGGGGCGG TCACCCGCTT CGGCGCGACC
TGCCGACCCA ACACCGCCGG GGCCAGCACC CTCGCGGCCG TCTCCGCCCC CGAATGGGAG
GTGGAAAAGA CCGCGGCCAT CATCAATGCG CAACCCGGTG TCAACCATTC CTACCTGCGC
GAGCATCGCT GGAACATCTG GTTCGTGGCC ACCGGCCCCG ACCGTGCCCA TGTGGATGCC
GCACTCGCCC AGATTGGGGC AGAGACGGGC CTGCGGGTGC TCGACCTGCG TCTGGTGGCG
CCGTTCAACA TCGACCTGGG CTTCGACATG AGCGGCAAGG CCGCCCATGG TGTCGAACCG
TCCCGGGTCG CCACGCTGGG GGCGATCGAT GCCACGGACC GCAAGCTGAT GCAGGTCCTC
TCCACCGGCC TGCCGATGGT TGCCCGCCCG TTTCGCGCGG TGGCCCCGGT CTGCGACCTG
GACGAGGCTG GCGCGTTGCG CCGCGCCGCC CGGCTTCTGG AGGAGGGCTA TCTGACCCGG
TTCGGCGTGA TCGTGCGTCA CCGGGCCCTT GGATGGCGCG CCAATGCCAT GGTCGTGTGG
CAGGTGCCGC CCGCACAGGT GGCCCAGGCG GGTCCGGCGC TTGCCGCAGT GCCGGGCGTG
ACCCTGTGCT ATCAGCGCAA AGCCGTGCCG GGTGTCTGGC CCTACACGCT TTACAACATG
ATCCACGGGC GCAGCCGCGA GGACGCGATG GCGGTCCTGA AACGCGCCCG CGCCCTGCCG
GAACTGCGCG GAGTGCCGCA TGAGATCCTG TTCTCGCTGC GCTGCTTCAA GCAGACCGGC
GCCCTGATCG ACCTGCCGCG AAAGGAACCC GCATGA
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| Protein sequence | MTLAEISLDD RLLNEFQRNV PVVARPFAEI AKSVGTTEDT VLARMQALVA RGAVTRFGAT
CRPNTAGAST LAAVSAPEWE VEKTAAIINA QPGVNHSYLR EHRWNIWFVA TGPDRAHVDA
ALAQIGAETG LRVLDLRLVA PFNIDLGFDM SGKAAHGVEP SRVATLGAID ATDRKLMQVL
STGLPMVARP FRAVAPVCDL DEAGALRRAA RLLEEGYLTR FGVIVRHRAL GWRANAMVVW
QVPPAQVAQA GPALAAVPGV TLCYQRKAVP GVWPYTLYNM IHGRSREDAM AVLKRARALP
ELRGVPHEIL FSLRCFKQTG ALIDLPRKEP A
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