| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3158 |
|---|
| Symbol | |
|---|
| ID | 5712214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3323471 |
|---|
| End bp | 3323968 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641269085 |
|---|
| Product | TRAP transporter-DctQ subunit putative |
|---|
| Protein accession | YP_001534492 |
|---|
| Protein GI | 159045698 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGC CGCGCCTGGT GCGCCTGGCC CGGCACCTTG AGCGCGGGGT GACGCCGATC
TGCCAGGCAC TCGCCCTGCT GGGCGCCGTG GCGGGCAGCG CCATTGTCGG TCTGATCGGC
GCCAGCGTGG CCATGCGCCA TATCGCCAAC GCGCCCTTCC GGTTCACCGA GGAGCTGGTG
GGGCTGTTGA TGACCGCGGC ATTTTTCCTG GTGCTGCCGC TCGTGACATT GAAATCCGAG
CATGTGCAGG TGCGCATCCT GCTCAACGCC CTGCCGGAGC GGATCGCGTG GGTCGTGACC
GGGCTGGCCG CGCTGTTCGG CATCATTTTC TGTGCGTGGC TGTTCTGGCT CTCGATCCCC
TGGTTCGAGT TCGCCTTCGC CCGCACCATC AAGACCGAGG TGGCGCGGCT GCTGCTCTGG
CCGTGGATGG CGCTGTTGCC GGTGTCTATG ATATTGACTG CGCTGGCCTT CGCGATCCGG
GGGGCGGTCC GCGACTGA
|
|---|
| Protein sequence | MAEPRLVRLA RHLERGVTPI CQALALLGAV AGSAIVGLIG ASVAMRHIAN APFRFTEELV
GLLMTAAFFL VLPLVTLKSE HVQVRILLNA LPERIAWVVT GLAALFGIIF CAWLFWLSIP
WFEFAFARTI KTEVARLLLW PWMALLPVSM ILTALAFAIR GAVRD
|
|---|
| |