| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3149 |
|---|
| Symbol | ddpX |
|---|
| ID | 5712205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3315173 |
|---|
| End bp | 3315985 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641269076 |
|---|
| Product | putative D-alanyl-d-alanine dipeptidase |
|---|
| Protein accession | YP_001534483 |
|---|
| Protein GI | 159045689 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2173] D-alanyl-D-alanine dipeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00328956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCG CCCGCCCCCT GCGCCTTTCC GACGGTCCGC TTGCCGCGCT GCGCGCGCGG
CCCCTCGCCG CCGAGGTCGC CATCGCCACC GCGCGCAAGG GCGATTACCG CGCCCATCCG
ATCGACCAGG CCCATGCACT CCATGCCGAC CCGATGGTCG ATCTGGCGGA GTACGGGGTC
GCCGGGGCCA ACCACTACCA CGCGACCCAT AACCCGCCCT ACCATGCCGA CATCACCGGC
AGCATCCCGG CCCTGCGCGC CCGGCGCTCC GTCGCCCAGC GTCTCGCGCG GGTGAACGAC
CGCCTTGCGG CCTACGGGCT GGAGATTTGG GTGTTCGATG CCTGGCGCCC CATCGCCGTG
CAAAACCATT TCCACGACCA CTGGATGCCC GATTACCTGC GCCGGGCGCG GCCCGAGTTG
GACGCTGCGG CGCTGCAGGC CGAAGTCACC CGCTACTGGG CGAAGGGCGC GCCTGGCGGG
CGGATCGACC CGGCCTCGCC CCCGCCCCAT GCGACCGGTG GCGCGGTGGA CCTGACCCTG
CGGGACAGCG CCAGCGGCGC GCATCTCTTC ATGGGCTCGA TCTTCGACGA CGTCACCGCC
CTGTCCAACA CCGACGCGTT CGAGGCGACC GACGACGCGA TGTCCTTCTC GGCGTTGGAG
GCCCGCGATA ACCGCCGCCT GCTCTTCTGG CTGATGGCGG GGGAGGGGCT GGCCAACAAC
CCCACCGAAT GGTGGCACTT TTCCCATGGC GACCAGATGT GGGCGCGGAT CACCGGGGCG
CGCGCGGCCC TGTTCGGCCC CGCACCCCCA TGA
|
|---|
| Protein sequence | MSPARPLRLS DGPLAALRAR PLAAEVAIAT ARKGDYRAHP IDQAHALHAD PMVDLAEYGV
AGANHYHATH NPPYHADITG SIPALRARRS VAQRLARVND RLAAYGLEIW VFDAWRPIAV
QNHFHDHWMP DYLRRARPEL DAAALQAEVT RYWAKGAPGG RIDPASPPPH ATGGAVDLTL
RDSASGAHLF MGSIFDDVTA LSNTDAFEAT DDAMSFSALE ARDNRRLLFW LMAGEGLANN
PTEWWHFSHG DQMWARITGA RAALFGPAPP
|
|---|
| |