Gene Dshi_3109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3109 
Symbol 
ID5710961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3274527 
End bp3276476 
Gene Length1950 bp 
Protein Length649 aa 
Translation table11 
GC content66% 
IMG OID641269036 
Producthypothetical protein 
Protein accessionYP_001534443 
Protein GI159045649 
COG category 
COG ID 
TIGRFAM ID[TIGR01905] doubled CXXCH domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTTTT CCGTGATGAC AGTTTTCCTG GCGCTTGGCG TGGCCCTCAC GGCCTCGATC 
GCGCGGGCGG AAGACCCGCG CGTGCCGGAC TATATCGGCA CGGCGGTGTG CGCGGATTGC
CACCAGGAGG CGTATGAGGC CTGGCAAGGC TCCCATCACG ACTTGGCCTG GACGCCGCCC
GATGCGCTGC ATGTGCTGGG CGATTTCGAC GATGCGGAAT TCGTCCATAA CGGCGTGCGC
ACGACCTTCA CCACCGAGGA CGGCGTGTTC TACATCACCT CCGACGGGCC GGATGGCAGG
TTGCAGAAAT ACCCGGTGCA CAGCGTTGCG GGGATCGCAC CGTTGCAGCA ATACCTGATC
GAGACGGAGC CGGGGAAGAT CCAGTCCTTC GACGTGGTCT GGGATATCGA GCGGGGCGCG
TGGTATCACC TCTATCCGGA TCAGGACTTG CCGGCCTCGG ACGGGTTGCA CTGGACCGGG
CCCTACAAGA ACTGGGGCGC GCGCTGCGCC GAGTGTCATG CCACGGGCTA CAAGAAGGGG
TACGACCCGG CGACGCGGAC CTACACCAGC ACCCAGGCGG AGATCGGCGT GGGATGCGAG
GCCTGCCACG GACCGGGGGA GGCCCATGTG AGTTGGGCCC TGCCGGGGGG CGATTACGAT
CCGACCCGCT GGGACCGGGT GGGCGAGACC GGGCTGACCA TGGATTTCGC GGCCGGTGCG
GAGGCGGAGA TCCAGCAATG CGCAGCCTGC CATTCCCGGC GCGAGGCGTT CGAGGAGGGC
AATCCGCTGC CCGGCACGCC TTATCACGAT GCCTATCGGC TCAGCCTCTT GCGGGACGGG
ATGTATCACC CGGACGGGCA GATCCTGGAA GAGGTCTATG TCTATGGCTC GTTCATCCAG
TCCAAGATGT ACGCCGCCGG GGTGGCCTGC ACCGATTGCC ACGATGCGCA TTCGGCGCAG
CGGCTGACCG AGACCAATGA CCTGTGCACC CAGTGCCATT CGACGGCCGG GAACCCGGAG
TTCCCGACCC TGCGGCTGGC GGAGTATGAC GACCCGTCCC ACCACTTCCA CGAGGTCGGC
AGCGAAGGGG CGCAGTGCAA GAGCTGCCAC ATGATCGAGC GCGACTACAT GGGGATCGAC
GGGCGGCGCG ACCATTCCTT CCGGGTGCCG CGCCCGGACC TGACTGTCGA GACCGGCGCG
CCCAATGCCT GCAACGATTG TCACACGGAT CGCAGCGCCG AGAAAATGGC GGCCGAGCTG
GAGGCGCGCT TTCCCGACAG CATCCATCGC GGTCCGCATT TCGCCCAGGT CTTCGCCCGC
GCCCGGATCG CGCCGCAGAG TACGGCGGAG AACATCGTGG CGCTGACCGA ATACCTCGAT
CTGCCGGGGA TCGTGCGGGC GTCGGCGCTG GAGCTGCTGC ATCCGATGGC GGGCCCGGAG
CTGGCGGATC GCATGGCGAT GGCTCTGCGC GATCCTGATC CGCTGGTGCG GGCCGCGGCG
GTGCCGATCC AACGTGCGGC ACCCGCGCCG GTTCGGGTGG AGCGCCTTGC GCCCCTGCTG
TCAGATCCGG TCCGAAGCGT GCGGATGGCG GCAGCCCGTG AATTCCTCGA TCTGAACATG
CGGGTTGTTC CGCCGCAGAC CACGCAAGCG CTCGGAGCCG CGATGTCGGA ATGGCAGTCG
TCGTTGCGGG CAAAGGCGGA TTTCCCGGAG ATCCAGATCA TCCTCGGCGG TGTCGGCTTG
ACGATGCGGA ACATGCCTGC CGCCCTGTCG GCTTTCTCCG AAGCGGTCGA CCTCGATCCG
CAGCGCGAAG AAGCCTGGTC TATCATTGTA CGCATCTATG CCGCGCTCGG GGATATGGCG
GCGGCGAGAG ATGCCGTGGA CGCAGCACTG GTTGCAAACC CCGAGAGTGT GGCGCTGCGG
GTTCTGCGGG GTGAAATCCT CCAGCAATAG
 
Protein sequence
MGFSVMTVFL ALGVALTASI ARAEDPRVPD YIGTAVCADC HQEAYEAWQG SHHDLAWTPP 
DALHVLGDFD DAEFVHNGVR TTFTTEDGVF YITSDGPDGR LQKYPVHSVA GIAPLQQYLI
ETEPGKIQSF DVVWDIERGA WYHLYPDQDL PASDGLHWTG PYKNWGARCA ECHATGYKKG
YDPATRTYTS TQAEIGVGCE ACHGPGEAHV SWALPGGDYD PTRWDRVGET GLTMDFAAGA
EAEIQQCAAC HSRREAFEEG NPLPGTPYHD AYRLSLLRDG MYHPDGQILE EVYVYGSFIQ
SKMYAAGVAC TDCHDAHSAQ RLTETNDLCT QCHSTAGNPE FPTLRLAEYD DPSHHFHEVG
SEGAQCKSCH MIERDYMGID GRRDHSFRVP RPDLTVETGA PNACNDCHTD RSAEKMAAEL
EARFPDSIHR GPHFAQVFAR ARIAPQSTAE NIVALTEYLD LPGIVRASAL ELLHPMAGPE
LADRMAMALR DPDPLVRAAA VPIQRAAPAP VRVERLAPLL SDPVRSVRMA AAREFLDLNM
RVVPPQTTQA LGAAMSEWQS SLRAKADFPE IQIILGGVGL TMRNMPAALS AFSEAVDLDP
QREEAWSIIV RIYAALGDMA AARDAVDAAL VANPESVALR VLRGEILQQ