| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3101 |
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| Symbol | |
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| ID | 5710953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3268262 |
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| End bp | 3270115 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641269028 |
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| Product | OmpA domain protein |
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| Protein accession | YP_001534435 |
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| Protein GI | 159045641 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.409183 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGC GTCGATACCT GCCGCTCCTT GCCTTGTCCG CTGCGGCCCT CGCATCGGTT
TTCACCGCCC GCCTGCTCGT CGAGCAGGTC GAGACACGCA CCCTCGCTTC GGTCGAGGAG
GTGCTCTTCA CCGAAAATGC CGAGTTTGCC CAGGCCGCCA TCGATGGCAC CCATGTCACG
CTCCTGGGCA CCGCCCCGGA CGAGGCGACG CGCTTTGCCA CCCTCTCGGC GGTGGGGCGC
GTGGTGGCCC CCGACCGGAT CATCGACGAG ATGACGGTGG CGGCCTCAAC CCGCATCGCA
CCGCCGGACT TCTCGCTGGA GCTTTTGCGC AACGCGGACG GGATCTCGCT GATCGGGCTG
GTCCCGGCTG ATATGGACTC CGACTCCCTG GGCGCCGAGC TGGCCGGGCT GGGCCCGGTG
TCGAACATGG TCGAAACCGC GGACTTCCCG ATCCCGGGGC GCTGGCTCGG GGCGGTCGGC
TATGCCCTGG ATGCGGCGGC GGAGATTCCG CGCGCAAAGA TTAGCGTCAC GCCGCAATCG
GTCCATATCA GCGCCCTCAC CGACAGCGCC GCCGAGAAGA CCGCGCTGGA GACCCGCCTG
CGGCGCACGG CCCCCGCGGG CGTCGCCGTC ACGCTCGATA TCGCGGCCCC CCGCCCGGCG
ATCACGCCTT TCCTGCTGCG CTTCACGCTG GATGACCGCG GGGCACGATT CGATGCTTGC
GCGGCCGAAA CCGAGGCGGG GCGCGCCCGC ATCCTCGCCG CCGCCGCGGA AACCGGCGCC
CCGCGTGAGA CAACTTGCGT GCTCGGCCTC GGCGCCCCGT CGCAGAACTG GGCCGAGGCC
GCCACCCTGG GCATCCGGGC CGTCGCAGCC CTCGGCGGCG GGGTCGTGAC CCTGTCGGAT
GCCGATGTCA CCCTTGTCGG TCGCGAAGAC ACGAATGCCG CCCTGTTCGA GCGCGTGGCA
GCCGAGTTCG AGGCGGATCT GCCGGCGGTG TTCTCCCTCA CCAGCACGCT GCCGCGCCCG
GAAGCCCCCC GCCCGGGCAT CTTCGATCCA AACCTGACAC GCTTCACCGC GACGCTCAGT
CCCGAGGGAC TGGTGCAGCT GCGCGGCCAT GTAACGGACA CGATCCGCAA GGAGGTGACC
GCCACCATGG CCAAGGCAAT GTTCGGTGCC CCGAATGTCT ATTCCGCCAC CACCGTGGCC
GAGGACGTGC CCGAAGGCTG GTCCGTGCGG GTGCTTGCGG GGCTCGAGGC GCTCGGGCAT
CTGCACAATG GCAGCGTGAC GATCACGCCC GAATTCATGC GCATCGGCGG CCGCACCGGG
GCGGAGGATG GCCCCGCCGA GATCGCCGGC CTGCTGGCCC GGCGCCTGCC GGAAGAGTCC
GATCTGCGGC TCGACGTCAC CTACGATCCG ATCCTCGATC CGGCCACGGC CCTGCCGACA
CCCGAGGAAT GCTACGCCCG CATCGACGCG ATCCAGGCCG AGGGCAAGAT CACCTTCGAG
CCGGGCTCGT CCCAGATCGC CGCCGAGGCC GAGGCCATCA TGGACCGCAT CGCACAGGTG
CTCGTGGACT GCAGCCATGT CGAATTCGAG ATCGCCGGGC ACACGGACAA CCAGGGGCGG
GAGGTGATGA ACCTCAATCT CAGCCAGGCG CGCGCCGACG CGGTGCTGGC CGCCCTGTCG
GAACGGCGGA TCCTGACCGG CAATCTCGTC GCCCGGGGAT ATGGCGAGGC CATGCCGATC
GCAGATAACA GCACCGCCGA AGGCCGAGAG GCCAACCGCC GGATCAGCTT TACCGCCCCG
ACGCCGCCCG TGACCTCCCC CACCGCCGAG ACCGAAACAG GAGACCCCCA GTGA
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| Protein sequence | MSKRRYLPLL ALSAAALASV FTARLLVEQV ETRTLASVEE VLFTENAEFA QAAIDGTHVT
LLGTAPDEAT RFATLSAVGR VVAPDRIIDE MTVAASTRIA PPDFSLELLR NADGISLIGL
VPADMDSDSL GAELAGLGPV SNMVETADFP IPGRWLGAVG YALDAAAEIP RAKISVTPQS
VHISALTDSA AEKTALETRL RRTAPAGVAV TLDIAAPRPA ITPFLLRFTL DDRGARFDAC
AAETEAGRAR ILAAAAETGA PRETTCVLGL GAPSQNWAEA ATLGIRAVAA LGGGVVTLSD
ADVTLVGRED TNAALFERVA AEFEADLPAV FSLTSTLPRP EAPRPGIFDP NLTRFTATLS
PEGLVQLRGH VTDTIRKEVT ATMAKAMFGA PNVYSATTVA EDVPEGWSVR VLAGLEALGH
LHNGSVTITP EFMRIGGRTG AEDGPAEIAG LLARRLPEES DLRLDVTYDP ILDPATALPT
PEECYARIDA IQAEGKITFE PGSSQIAAEA EAIMDRIAQV LVDCSHVEFE IAGHTDNQGR
EVMNLNLSQA RADAVLAALS ERRILTGNLV ARGYGEAMPI ADNSTAEGRE ANRRISFTAP
TPPVTSPTAE TETGDPQ
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