| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3058 |
|---|
| Symbol | |
|---|
| ID | 5710910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3225943 |
|---|
| End bp | 3228627 |
|---|
| Gene Length | 2685 bp |
|---|
| Protein Length | 894 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641268985 |
|---|
| Product | conserved hypothetical protein TIGR02302 |
|---|
| Protein accession | YP_001534392 |
|---|
| Protein GI | 159045598 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02302] conserved hypothetical protein TIGR02302 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.56238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACC CCAACGCGGC ACCGCGTGAC GAGGATTTTG CAACCGGCAA GGACAGCGCC
CTCCGGCACC TGACCTGGCC GCGCCGCCTG ACCCAGATCG GCATGACGGC CGAGCGCTTC
GCGCGCGCTT TCTGGCCGCT CTGGTGCGTG CTGGCGCTCG GCCTCGTGGT GGTGATCTTC
GGCGCGGGGC TGAGCGCGCC GCTCGAGGCG ATCTGGATCG CGACCGTCGT CTTCCTGCTC
GCCGCCGGGG GCGCGCTCTG GCACGGGCTG CGACAGTTCC GCCTGCCCAG CCGGGCCGAG
GCCGAGGCCC GCCTCGACCA GACCGTCCCG GGCCGCCCGA TCGAGACCCT GCGCGACCTG
CAGGCCATCG GGGCGACCGA CGCGGGCTCC CGCGCGGTCT GGGACGCGCA CCTGCGCCGC
ATCGCCGAAC GCGCCCGCGG CGCCAAGGCG GTCCTGCCCA ACCTGCGCCT GGCCGACCGC
GATCCGTATG CCCTGCGCTA CGTGGGCGCG ACCGGGCTCG CGGTGGCGCT GCTCTTCGGC
GGGCTGGGGC AGGTGCGCGA CCTCGACCGC GCCCTGACCC CCGGCGGGCA GGCGCTCGCC
ACCGGCCCGG CCTGGGAAGG CTGGATCGAA CCGCCCGCCT ATACCGGCAA GCCGAGCCTC
TATCTCAACG ACCTCACCGG CGCCGCCCTG GCGGTCCCCG AAGGCAGCCG CATCACCCTG
CGCCTCTACA GCAACGAGGG CGCGCTGTCG GTGCGCGAGG ATGTGTCCGA CGCGCCCGCC
GCACCCTCCA ACGATCTCGC CCAGGAGGTG ATCGTCGCCC GTGACGGCAC GCTCGCCATC
GAAGGCGAGG GCGGGCGCAG CTGGGATCTG ACCGTGCTGC CGGACGAGCC TCCCACCATC
GCCGTGGACG GCCCGGTCAC CCGCACCGCC ATGGGCGAGA TGGAGCTGCC CTTCGCGGCC
CAGGACGATT ACGCCGTGGT CGGTGGCACC GCCCGGATCA CTCTCGACCT GCCCAACGTG
CCCCGCACCC ACGGGCTCAC CGCCGCGCCC GAGCCGCGCG AGACCATCGA GGTCAACATC
CCGCTCTCGA TCTCCGGCGA CCGCTCGGAT TTCACCGAGG TGCTGGTCGA CAACTTCTCC
GAACACCCCT GGGCAAACCT GCCCGTGACA CTCACCTTCA CCGCCCAGGA CGACCTGCGC
CAGGAAGGCG TGGCCGAACC GTTCGAGATG CTCCTGCCCG GGCGCCGCTT CTTCGACCCG
ATGGCCCAGG CCATCATCGA ACAGCGCCGC GATCTGCTGT GGACCCGCGA CAATGCCGAA
CGCGTCAGCC AGCTTCTGCG CGCCGTCAGC CACCGCCCCG AGGGGTTCAT CACCAACGAC
ACCGCCTACC TGATGCTGCG CACCGCGCTC TCCCGCCTTA TCGTCGGGCT GGAGACCGAG
GTCACGCCGG TCCTGCAGGA AGAGGTGGCC GAGGCCCTCT GGAATGCCGC CCTGCAATTC
GAAGAAGGCG ATCTTGCCAA CGCCGCCGAA CGCCTCCGCC GCGCGCAGGA GCGTCTGTCG
GAGGCCATGG AAAACGGCGC CACGGACGAA GAGATCGCCG AGCTGATGCA GGAATTGCGC
GAGGCAATGC AGAACATGAT GCGCGAGATG GCCGAGCAGT TTCAGCGCGA CCAGGAAAAC
GGCCAGCAGC AGGCCCAGAC GCCCCAGGAC ATGCAGGAAA TCACCGGTGA CCAGCTGCAG
GACATGCTCA ACCGGCTCCA GCAACTGATG GAAGAGGGCC GCATGGACGA GGCCCAGGCC
CTGCTCGACC AGATGATGCA GATGATGCAG AACATGCAGA TGGCTCAGCA GGGCCAGCAA
GGCCAGCAGG GCGAGGGCCA GCAGGCCATG GAAGGCCTGC AGGAAACCCT GCGCCAGCAG
CAGGATCTGG CGGACGAAGC CTTCAACGAC ATGCAGAACC AGCAGGGCCA GCAAGGTCAG
CAGCAGGGAC AACAACAGGG CCAGCAGCAA GGACAGCAGC AGGGCCAGCA GCCGGGCCAG
CAACCCGGCC AGGGCCAGCA AGGCCAGGGC CAGCAAGGCC AGCAATTCGG CCAGGGTCAG
CAGCCGGGCC AGGGACAAGG TCAGCAGCAG CCGGGCCAGA CCCCGGGCCA GGGCCAGGCG
CAGAACGGGC AGGGCATGCC CGACGCCGAG AGCCTCGCCC GCCGCCAGGA CCAGCTGGGC
GACATCCTAG ACGAGCAGGC CCAGAACCTG CCCGGGGCCG GCACCGAGCT GGGCGATGCC
GCGCGCGACG CGCTGGACCG CGCCGGGCGC AGCATGGACG ACGCCGCCGA CGCGCTGGAA
CGGGGCGACC TGGCCGAAGC GCTCGACAAC CAGTCCGACG CCATGGATGC CATCCGCGAA
GGCATGGAAA ACCTCGGGGA GCAAATGGCC CAGCAGCAGC AACAGCAGCA GCCGGGTGGC
CAGCAGGGCC AGGCCGCCAA CGAGGGCCCG GGCCAGCAAC GCGACCCGCT CGGCCGCGAC
AACGGCAACC AGGGACGGCT CGGGACCGAC GAGAACCTGC TCCAGGGCGA GGACCGCTAC
CGCCGCGCGC AGGAGCTTCT GGACGAAATC CGCCGCCGCT CCGGCGAGCA GGAGCGCCCG
GATGCCGAGC TCGACTACCT CAAACGTCTG CTCGACCGCT TCTGA
|
|---|
| Protein sequence | MPDPNAAPRD EDFATGKDSA LRHLTWPRRL TQIGMTAERF ARAFWPLWCV LALGLVVVIF
GAGLSAPLEA IWIATVVFLL AAGGALWHGL RQFRLPSRAE AEARLDQTVP GRPIETLRDL
QAIGATDAGS RAVWDAHLRR IAERARGAKA VLPNLRLADR DPYALRYVGA TGLAVALLFG
GLGQVRDLDR ALTPGGQALA TGPAWEGWIE PPAYTGKPSL YLNDLTGAAL AVPEGSRITL
RLYSNEGALS VREDVSDAPA APSNDLAQEV IVARDGTLAI EGEGGRSWDL TVLPDEPPTI
AVDGPVTRTA MGEMELPFAA QDDYAVVGGT ARITLDLPNV PRTHGLTAAP EPRETIEVNI
PLSISGDRSD FTEVLVDNFS EHPWANLPVT LTFTAQDDLR QEGVAEPFEM LLPGRRFFDP
MAQAIIEQRR DLLWTRDNAE RVSQLLRAVS HRPEGFITND TAYLMLRTAL SRLIVGLETE
VTPVLQEEVA EALWNAALQF EEGDLANAAE RLRRAQERLS EAMENGATDE EIAELMQELR
EAMQNMMREM AEQFQRDQEN GQQQAQTPQD MQEITGDQLQ DMLNRLQQLM EEGRMDEAQA
LLDQMMQMMQ NMQMAQQGQQ GQQGEGQQAM EGLQETLRQQ QDLADEAFND MQNQQGQQGQ
QQGQQQGQQQ GQQQGQQPGQ QPGQGQQGQG QQGQQFGQGQ QPGQGQGQQQ PGQTPGQGQA
QNGQGMPDAE SLARRQDQLG DILDEQAQNL PGAGTELGDA ARDALDRAGR SMDDAADALE
RGDLAEALDN QSDAMDAIRE GMENLGEQMA QQQQQQQPGG QQGQAANEGP GQQRDPLGRD
NGNQGRLGTD ENLLQGEDRY RRAQELLDEI RRRSGEQERP DAELDYLKRL LDRF
|
|---|
| |