| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3032 |
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| Symbol | |
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| ID | 5710884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3199429 |
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| End bp | 3201147 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641268959 |
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| Product | heparinase II/III family protein |
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| Protein accession | YP_001534366 |
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| Protein GI | 159045572 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.310136 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGCA GTCTGCAACA GGACCTTTCG CGGTCGACGG GCTCGCGTTC CCTCGGCCAC
AGGGTCATGG ACGGGTTCCA TGCCCGGCTG GCGCGGTTCG GGCGTCCGGC CACGGCCTTC
GTGTCGACGC CGGAGCCGAC GAGCTTCGGC GATCCGGCGC GGGGGCGGCA GTTGCTGGCG
GGCAATCACC TGATCAATGG CGAGGTGATC ACCGCGCCGG GCGTGTCGCT GTGGGAGATT
GCCGAGAACG CGCCGGGGCG CGATGCGCTG CTGCTGCATG ATTTCAAATG GCTGGATGAT
CTCGCGGCCC TGGGCGGCCC GGCGGCACAA GGGCTGGCGC AGACCGCGCT GGGCGAGTGG
ATCGCGCGTT ACGGGACCGG GCGTGGGCCG GGCTGGACCC CGGACCTGAC CGCGCGGCGG
ATGATGCGCT GGATTTCCCA TGCGGTGATG TTGCTGGGCG GGGAAGGATC GCGCCTGTCG
CCGGGGTTCT TCCGGTCGCT CGGGCAGCAG GGCGTATTTC TCAGCCGCCG CTGGAAGACC
GCCGCGTCGG GGCGCGCGCG GTTCGAGGCG CTGGCCGGGA TGATTTACGC GGGGATGAGC
CTGCGCGGGC TGGAGGGGCG GGTGGATGCC GCCGCCGCCG CCCTCGACCG GGCCTGCGCG
GCGGAAATCG ACGGGCAGGG GGGGCTCGCC TCTCGCAACC CCGAAGACAT GCTGGAGGTG
CTGCTCCTGC TGACCTGGGC CGCGGACGCG TTGGAGGAGC GGGGCCGCAG TCCGAGCGTG
GAGCAGGTGC GCGCCATCGC CCGGATCGCG CCGTCCTTGC GTGCGCTGCG TCACGGCGAT
GGCGGGCTGG TACGTTGCCA CGGCGGCGGG CGCGGCGCGG CAGAGCAGGT GGCGCAGGCG
CTGGCCCGAA CCGGGATTGT CGCGACCTCG GATGCGACGC TGGTGATGGG CTATGCCCGG
CTGGCGGCGG GCAGCACCAC GCTGATCCTC GATGCCGCGG TGCCGCCGCG GGGGGCAGGG
GCGCTCTCGG CCCATGCCAG CACGCTCGCC TTCGAGATGA CCTCGGGCCG GTTCCCGATC
GTGATCAATT GCGGCTCGGG GGCGAGTTTC GGGGCGGAGT GGCGCCGGGC CGGGCGTGCG
ACTGCGTCCC ATTCCACCCT GGGGATCGAC GGCACCTCTT CCTCCCGGCT GGAGCCGCGG
GCGCGGCGGC GGGGCCAGGA GGAGGCCCTT CTCGACGTGC CCACGCGGGT GACGGTGGAG
GCGTTCGATA CGTCGCCGCA TCTGCGCGGG CTGCTGCTGA CCCATAACGG TTATGACCCG
ACCCACGGTT TGACCCATGC AAGGCAGGTG CAGTTGAGGG CCGATGGGCG GATGCTGGAG
GGCACCGATA CGCTGGCTGC GCTGGAGCCC GGCGCACGCC TGCGCTGCGA CCGGGCGATG
ACGGCGGCGG GCGGCGCGGG GCTGGCCTTC ACGGTGCGGT TCCACCTGGC CCCCGAGGTG
GAGGCGCAGG TCGACATGGG GGGCACCGCG GTGTCGTTGC TGCCGGGCGG TGACGAGGTG
TGGATCTTCC GGGCGCGGGG GGCGCGGATG GCGCTTGCCC CCAGCGTCGC GCTCGAACGC
GGGCGGCTGA AGCCCCGCGC TACCCGGCAG ATCGTGCTGA CCGGGCGGCT TCTGGATTAC
GCCACGGAGC TGGACTGGTC GTTCACCCGG GTGAGCTGA
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| Protein sequence | MAGSLQQDLS RSTGSRSLGH RVMDGFHARL ARFGRPATAF VSTPEPTSFG DPARGRQLLA
GNHLINGEVI TAPGVSLWEI AENAPGRDAL LLHDFKWLDD LAALGGPAAQ GLAQTALGEW
IARYGTGRGP GWTPDLTARR MMRWISHAVM LLGGEGSRLS PGFFRSLGQQ GVFLSRRWKT
AASGRARFEA LAGMIYAGMS LRGLEGRVDA AAAALDRACA AEIDGQGGLA SRNPEDMLEV
LLLLTWAADA LEERGRSPSV EQVRAIARIA PSLRALRHGD GGLVRCHGGG RGAAEQVAQA
LARTGIVATS DATLVMGYAR LAAGSTTLIL DAAVPPRGAG ALSAHASTLA FEMTSGRFPI
VINCGSGASF GAEWRRAGRA TASHSTLGID GTSSSRLEPR ARRRGQEEAL LDVPTRVTVE
AFDTSPHLRG LLLTHNGYDP THGLTHARQV QLRADGRMLE GTDTLAALEP GARLRCDRAM
TAAGGAGLAF TVRFHLAPEV EAQVDMGGTA VSLLPGGDEV WIFRARGARM ALAPSVALER
GRLKPRATRQ IVLTGRLLDY ATELDWSFTR VS
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