| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3011 |
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| Symbol | |
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| ID | 5710863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3179758 |
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| End bp | 3181491 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641268938 |
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| Product | ABC transporter related |
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| Protein accession | YP_001534345 |
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| Protein GI | 159045551 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.631119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.383065 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTTA GACGCACGCT GCTCACGGTC TCCGCCCTGG TCCTTGCGGC CACATCCGGC
GCGGCACTCG CCCAGGATGT TGCCCGCGAG GACACGGTGA TCTTCGACCT GGACCGCACC
ATCAAGGACC CGGAGAATTT CAACTGGTTC ACCCCGGGCA CCAAGCGGAT GCATGGCGCG
CACCAGGCCA TGTGGGAGCC GCTTTTCATC CTGAATTACG GCACGGGGGA ACTCGAACCC
TGGCTCGCCA GCGGGTTCGA GGGCAACGAG ACCAACGATG AGTTCACCGT CACCCTGCGC
GAGGGCGTGG AGTGGTCCGA TGGCGAGGCG TTCAACGCCG ATGACGTGGT CTTCACCGTC
AACATGGCGC TGGAGAACGA AGAGATCTCC TCGCGCGAGG CGGCCACCAT CCGGGCCCAG
GTCGCCAGCG TCGAGAAGAT CGATGACCTG ACCGTGCGCT TCAATCTGAA CGCTCCCAAC
CCGCGGTTCC TGGTGGAAAA CTTCGGGGTG CGGATCTTCG GGTCGTTCCT GATCATGCCC
GAGCACATCT GGGCCGGGCA GGATCCCGCC ACCTTCGCCT TCTTTCCGCC CATCGGCACC
GGGCCCTATA CCTACACCTC CAGTGCGACC AACCGGGCCA TCTGGGACCG CAACGACGAC
TGGTGGGGCG CCAAGACCGG CTTCATGGAC CTGCCCGAGC CCCTGCGCCT GATCTTCTTG
GAAACGGGGG GCGAGGAGAG CCGCGCGCAG TTGATCGCCA CGAACCAGAT GGACGCGGCG
CAGAACGTCT CCGTCGGCAC GTTCGAGGCG ATCCGCTTCC AGAACCCGAA CGTCATCGCC
TGGTATTCCG ACTACCCCTA TGCCGCCGCC GACCCCTGCG CGCGGCAGTT GGAGATCAAC
ACCACCGTCG CCCCCTGGGA CAGTGCCGCG ATGCGCAAGG CCGTGTCGCT GATCATCGAC
CGCAACCAGA TCGTGAATGT CGCCGCCGAG GGCGCGACCG TGGCGTCGGA GACGATGTTC
GCACAATACG GCTCCATGGC GCCGTTCATC GACGCCGTGA AGGCGGCGGG CTTTGGCCTG
TCGGACGAGC CGGACCTGGA GGCTGCGGCG GCCCTGATCG AGGGCGAGGG CTGGGCCAAG
AACGGCGACG GGTTCTACGA GAAGGATGGC GAGGTCCTCA GCGTGGACAT CCACGTGAAT
TCAGCCTCCA CCGAGTATAC CCGCACCATC GACGTGGTGG CCGAGCAATT GACCCGCGCG
GGCATCCAGG CGCGGTCGGT GCCGGTGGAG AACGGCGTGT TCTGGGGCGA GGTGCTGCCC
TTCGGCACGT TCGAGATGTC CTATAGCTGG CTGTCCTGCG GGTCGGTGAA CGAGCCCTGG
GCGTCCATGG GCCGCTACAC GGTCAAGGAC GTGGTGCCGG TGGGCGAACG CTCCCCGGGC
TTCAACAACA CCGCCCGGTG GGACGGCCCG GCGGCGGAGG CCTACAGTGC GATCGTCGAC
GAGATCGCGA AACGACCCCT GGGCGATCCG GAAGTGCCCG AGCTGGTGGC GGAGGCCTAT
CAGTATCTGG ATGCGGAAAT GCCGTTCATC CCGCTGGTGC AGTCGGCGAA GCTCCTGCCG
ATGAATACCA CCTATTGGAC CGGCTGGCCC ACGTCGGAGA ACTACTACAA CCACCCGTTC
TTCTGGTGGA ACCACACGCA CCAGATCATC CACAACCTCG AAAAGGTCGA GTGA
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| Protein sequence | MTLRRTLLTV SALVLAATSG AALAQDVARE DTVIFDLDRT IKDPENFNWF TPGTKRMHGA
HQAMWEPLFI LNYGTGELEP WLASGFEGNE TNDEFTVTLR EGVEWSDGEA FNADDVVFTV
NMALENEEIS SREAATIRAQ VASVEKIDDL TVRFNLNAPN PRFLVENFGV RIFGSFLIMP
EHIWAGQDPA TFAFFPPIGT GPYTYTSSAT NRAIWDRNDD WWGAKTGFMD LPEPLRLIFL
ETGGEESRAQ LIATNQMDAA QNVSVGTFEA IRFQNPNVIA WYSDYPYAAA DPCARQLEIN
TTVAPWDSAA MRKAVSLIID RNQIVNVAAE GATVASETMF AQYGSMAPFI DAVKAAGFGL
SDEPDLEAAA ALIEGEGWAK NGDGFYEKDG EVLSVDIHVN SASTEYTRTI DVVAEQLTRA
GIQARSVPVE NGVFWGEVLP FGTFEMSYSW LSCGSVNEPW ASMGRYTVKD VVPVGERSPG
FNNTARWDGP AAEAYSAIVD EIAKRPLGDP EVPELVAEAY QYLDAEMPFI PLVQSAKLLP
MNTTYWTGWP TSENYYNHPF FWWNHTHQII HNLEKVE
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