| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2967 |
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| Symbol | |
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| ID | 5710818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3133015 |
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| End bp | 3135510 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641268893 |
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| Product | bifunctional enzyme involved in glycine degradation |
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| Protein accession | YP_001534301 |
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| Protein GI | 159045507 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.782343 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACCC AAGTCAAGGC GCTCGTCGTG GGCGGCGGTG CGGTCGGCAC CGGGATCGCC
TATCACCTGG GCAAGGCGGG GTGGGACGTG CTGCTGTTGG AGCGTGACGA GCTGACCTCG
GGCTCCACCT GGCACGCGGC GGGCCTGCTG CCGCTCTTCA ACATGTCCTA CGCGACGTCG
CATATCCACG ACTATTCGGT GAAGTTCTAC AAGGGACTGG AGGCTGAGAC CGGCCTGAAC
CCGGGCTTTG CGGTGGTGGG CAACCTGCGC ATGGCCCAGA CCCAGGCGCG GATGGACGAA
TACATGCTCT ATGCCGCCAC CGCCGAGACC GTGGGCATCC CCCATGAATG GCTGACCCCG
GCCCAGATCA GGGACCGCTA CCCGCTGGTG CGGACCGAGG ATCTGAAGGG CGCGATCCTG
CACCCGACCG ATGGCTACAT AAACCCGGCC GATGTGACCC AGGCCATGGC CAAGGGCGCG
CGCCAGCACG GGGTCGCGAT CGAGCGGAAG TGGCAGGTCG ATGCCTACGC CTGGCAGGGG
GATCATTGGG CGGTGACGGT GACCAAGATG GCCGACCGGG GCGGCAACCT CGTGCCCACG
GACGAACAGC AGGTCATCCG CGCCGAGCAT GTGGTGACCG CCACCGGCAA CCACGCTCAG
CGCACCGCGC AACTGCTGGG CATCAAGATC CCCGCGATCC CGGTGGAACA CCAGTATATC
GTCACCGAAC CCGACCCGGC GCTGGTGCAG TGGCGCAAGG ACAACCCCGA GCACCCGGTG
CTGCGCGACG CGGACGCGAA ATGGTACGTG CGCGAGGAAC GCGGTGGCTG GATCCTCGGC
CCCTACGAGC AGGGCGCGCC CGCGCGGTTC AAATACGCCG TGCCCGAGAG CTTCCGCGCG
GACCTCTTCC CCCTCGATCT GGAGCGGATC GAAGAGGAAT ACATGTCCAT GATCCACCGG
ATTCCGACTT CGGAAACCGT GGGGCTCAAG GACGACTACA ACGGCCCGAT CTGCTACACC
CCCGACGGCA ACCCGCTGGT CGGCCCGGCG CCCGGCTTGC GCAACATGTG GCTGGCCGAA
GGCTTCAGCT TCGGCATCAC CGCGGCGGGG GGCACGGGAT ACTACCTCGC GCAGATGATG
ACCGAGGGCG AGGCGGAGAT CGACATGGCC TCGCTGGATC CACGCCGCTA CGGGTCCTGG
ATGACCACCG AGTATGCCGC GACCAAGAAC GAGGAATGCT ATGCCCATGT CTTCATCCTG
CACCACCCGG ATGAAGAGCG CGCCGCCTGC CGCCCCCTGC GCACCACCCC CGCCTATGAC
CGCCAGAAAG CGCTCGGCGC CCAGTTCGGG CAGGTCAACG GCTGGGAACG GCCCAATTAC
TACGGCCCCT TGGACGCGCC CGACAACTTC GATCACGACG CGCGGTCCTT CCGGCGCGGC
GGCTGGTGGG ACTACGCCCG GGCCGAGGCC GAGGCTGTGC GAAGCACCGC CGGGCTGATC
GACGCCACCG CCTTTGCCAA GCACCGGGTG TCGGGGCCGG GGGCGACCGC GTTCCTGGAC
TGGTTCACCA CCAACACCCT GCCGCGCGTG GGCCGGATCA ACCTGACCTA CGCCCTGACC
GGGGCCGGGA CCACCCACAC CGAATACACG ATCCTGCGAA CGGGCGAGGA CGACTATACC
CTGATCTCCG CCGGGGCCTG GCACGCCTAT GACCAGGACT TCCTGACCAA GGCGATCGAG
GACACAGAGC CCCGTTTCGG CCGCATCACC CTGCAGGACA CCACGACCCA GACCGGCGTC
TTCGCCCTCG CCGGACCGAA GGCGCGCGAC ATCCTCAAGG CGCTGATCCG CGACCCGGAC
CCCGAAACGG CCCTCTCGAA CAAACGCTTC CCCTGGCTCG GCACCCGCGA GATCGAGCTG
GGCATGTGCC CCCTGCGCGC CGTCCGCGTA GCCTATACCG GCGCGCTGGG GTGGGAGCTG
CATCACCCGA TCGAGATGCA GACCTATCTC TGGGACCAAC TGATGGCCGT CGGCGCGGCG
CATGGCCTGA AACCCGTGGG CGCGCGGGCG CAGAACTGGC TCCGGCAAGA GAAATCCTAC
CGCGCCTTCG GCACCGAACT GGGCCGCGAC GCCACTCCGC TGGAAGCCGG GCTGGACCGT
TTCGTGGACC TGTCCAAGGA CTTCCACGGC AAGGCGGCGA TGGTGGAAAC CGGGATTCGG
TCGCGCTGCG TCACCCTGCT GATCGACGGG CCGGACGATG CCGACCCCTG GGGCCGCGAG
GCGCTCTATG CCGGTGACAC CCGGGTCGGC CGCCTGACCT CGGGGGGCTA CTCCGTGGCC
TTCGGCAAAT CCATCGCCAT GGGCTACGTC ACCCCCGACC ACGCGGCCCC GGGGACCAAA
CTCAAGGTCC GGATGTTCAA CGCTCTCTGG GATGCGGAGG TCACCGAAGA CAGCCCCTTC
GACCCGCAAA ACGCCACCAT CCGCGCCGAC GGCTGA
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| Protein sequence | MKTQVKALVV GGGAVGTGIA YHLGKAGWDV LLLERDELTS GSTWHAAGLL PLFNMSYATS
HIHDYSVKFY KGLEAETGLN PGFAVVGNLR MAQTQARMDE YMLYAATAET VGIPHEWLTP
AQIRDRYPLV RTEDLKGAIL HPTDGYINPA DVTQAMAKGA RQHGVAIERK WQVDAYAWQG
DHWAVTVTKM ADRGGNLVPT DEQQVIRAEH VVTATGNHAQ RTAQLLGIKI PAIPVEHQYI
VTEPDPALVQ WRKDNPEHPV LRDADAKWYV REERGGWILG PYEQGAPARF KYAVPESFRA
DLFPLDLERI EEEYMSMIHR IPTSETVGLK DDYNGPICYT PDGNPLVGPA PGLRNMWLAE
GFSFGITAAG GTGYYLAQMM TEGEAEIDMA SLDPRRYGSW MTTEYAATKN EECYAHVFIL
HHPDEERAAC RPLRTTPAYD RQKALGAQFG QVNGWERPNY YGPLDAPDNF DHDARSFRRG
GWWDYARAEA EAVRSTAGLI DATAFAKHRV SGPGATAFLD WFTTNTLPRV GRINLTYALT
GAGTTHTEYT ILRTGEDDYT LISAGAWHAY DQDFLTKAIE DTEPRFGRIT LQDTTTQTGV
FALAGPKARD ILKALIRDPD PETALSNKRF PWLGTREIEL GMCPLRAVRV AYTGALGWEL
HHPIEMQTYL WDQLMAVGAA HGLKPVGARA QNWLRQEKSY RAFGTELGRD ATPLEAGLDR
FVDLSKDFHG KAAMVETGIR SRCVTLLIDG PDDADPWGRE ALYAGDTRVG RLTSGGYSVA
FGKSIAMGYV TPDHAAPGTK LKVRMFNALW DAEVTEDSPF DPQNATIRAD G
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