| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2963 |
|---|
| Symbol | |
|---|
| ID | 5710814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3129327 |
|---|
| End bp | 3130253 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641268889 |
|---|
| Product | putative ABC type branched chain amino acid transport system |
|---|
| Protein accession | YP_001534297 |
|---|
| Protein GI | 159045503 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1079] Uncharacterized ABC-type transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.40426 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCCA TCAACCCGGT CATCCTGATC GCCTCGCTGA TCGTGGCCTC CACGCCGATC
CTGCTGGCCG CCCTGGGCGA GCTGGTCTGC GAAAAGGCGG GGGTGCTGAA CCTCGGGGTC
GAGGGGATGA TGATCTTCGG CGCGATCTGC GGCTTCGCCA TCGCGGTGGA GACCGAAAGC
CCCCTGCTCG GCTTTCTGTG CGCGGCGCTG GCGGGGGCGG CCCTGTCGAT GATCTTCGGG
GTGCTGACGC AGTTTCTGCT GTCCAACCAG GTGGCGACGG GTCTTGCGCT GACGCTCTTC
GGGCTGGGGT TCTCGGCGCT CGTCGGGCAG GGTTATGTCG GGCTCAAGGC CCCGGCCACG
CCCGCGGTGC CCTTCGGCCC GCTGGCGGAC CTGCCCGTGG TCGGGCCGAT ACTGTTTTCC
CATGACGCCA TGGTCTATGC CTCCATCGCG CTGGTGGCGG CGGTCTGGTA CGTGCTGGCC
CATACCCGCG CGGGCCTGAT CCTGCGCGCG GTGGGCGAGA GCCACGACGC CGCCCATGCG
CTCGGCTACA AGGTGGTGCG CATCCGCCTG CTGGCGATCG CCTTCGGCGG GGCGCTGGCG
GGCTTGGGCG GTGCGTATCT GAGCCTCGTG CGCGTGCCGC AATGGACCGA GGGCATGACC
GCCGGCGCGG GCTGGATCGC GCTGGCAATC GTGGTCTTCG CCAGCTGGCG GCCCTGGCGG
ATCGTGCTCG GCGCCTATCT CTTCGGCGGG ATCAGCGTGC TGCAACTCAA CCTGCAGGCC
GCGGGCATCA AGATCCCGGT GGAGCTTCTG TCCATGAGCC CCTATGTGAT TACCATCGTG
GTGCTGGTGC TGATGTCCCG CGACCGCACG CGCACCGCGC TCAACGCGCC CGCCGCACTC
GGGCGCAGCT TCCACGCCTC CAGCTGA
|
|---|
| Protein sequence | MDAINPVILI ASLIVASTPI LLAALGELVC EKAGVLNLGV EGMMIFGAIC GFAIAVETES
PLLGFLCAAL AGAALSMIFG VLTQFLLSNQ VATGLALTLF GLGFSALVGQ GYVGLKAPAT
PAVPFGPLAD LPVVGPILFS HDAMVYASIA LVAAVWYVLA HTRAGLILRA VGESHDAAHA
LGYKVVRIRL LAIAFGGALA GLGGAYLSLV RVPQWTEGMT AGAGWIALAI VVFASWRPWR
IVLGAYLFGG ISVLQLNLQA AGIKIPVELL SMSPYVITIV VLVLMSRDRT RTALNAPAAL
GRSFHASS
|
|---|
| |