| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2960 |
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| Symbol | xdhC |
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| ID | 5710811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3125502 |
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| End bp | 3126464 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641268886 |
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| Product | putative xanthine dehydrogenase accessory protein |
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| Protein accession | YP_001534294 |
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| Protein GI | 159045500 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1975] Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
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| TIGRFAM ID | [TIGR02964] xanthine dehydrogenase accessory protein XdhC |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.17741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCTTGG ACGCGGACGC CCTGCGCGCC GCGGTGGCCG CCCATGGCGC GGTCGCCCGG
GTGGTGGTCG CAGGCATCAA GGGTTCGGTC CCGCGCGAGG TGGGGGCGGC GATGCTGGTC
TGGGAGGGCG GGCAATCCGG CACCATCGGT GGCGGCGCGC TCGAATTCGA GGCCGCGGCC
CGCGCCCGGA TAGTGCTGCG CGACGGCACC GACCGGCTGG ACCACGCGCC GCTCGGCCCG
GGGCTGGGCC AATGCTGCGG CGGGGCGGTG ACCTTGCTGA CCGAGCGCTT CGATGCGGCC
CGGCTGGATC ATATGGAGGG CGCGATCTTC GCCCGCCCCG CCCCCGGTGG CCCGGCGCAG
ATGCCGCTCA GCGTCCGCAA GGCGCTGCGC ACTGCCCGAG GCGAGGGGCA TGCCGCGTCG
CTGACCCTGC GCGCAGGCTG GGTGCTGGAG CCAATGGCGC GCGCCACACG GCCGCTCTGG
ATCTACGGGG CCGGACATGT GGGCCGGGCC CTGGTACACA CGCTCGCCCC CCTGCCGGAT
TTCGCGATCA CATGGGTGGA TACCGGGCCG GAGCGTTTCC CAGAGGCCCT GCCCGCGGGT
GTCACGGTCC TGCCAGCCGC TGACCCGGCA CTGGCGGCGG GGCGCGCGTC CGAGGACGCG
GTGCACCTGA TCCTGACCTA TTCCCATGCG CTCGATCTCG CCCTGTGCCA TGCGCTGCTG
TCCCGGCCCG CGGCGGGGAT CGGGTTGATC GGGTCGGCGA CGAAATGGGC GCGGTTCCGG
TCGCGGCTGC GCCAGCTGGG CCATGCGGAT GCCCAAATTT CGCGCATCAC CTGCCCGATT
GGCGACCCGG CCTTGGGCAA ACACCCACAA GCCATTGCGG TGGGCGTGGC TTCCAGCCTA
CTTTCCGGGC AGATGATGCA ATCCTCCGCA TACCCTGCGT CCGCTGAGGC CGCTGCCCGA
TGA
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| Protein sequence | MSLDADALRA AVAAHGAVAR VVVAGIKGSV PREVGAAMLV WEGGQSGTIG GGALEFEAAA
RARIVLRDGT DRLDHAPLGP GLGQCCGGAV TLLTERFDAA RLDHMEGAIF ARPAPGGPAQ
MPLSVRKALR TARGEGHAAS LTLRAGWVLE PMARATRPLW IYGAGHVGRA LVHTLAPLPD
FAITWVDTGP ERFPEALPAG VTVLPAADPA LAAGRASEDA VHLILTYSHA LDLALCHALL
SRPAAGIGLI GSATKWARFR SRLRQLGHAD AQISRITCPI GDPALGKHPQ AIAVGVASSL
LSGQMMQSSA YPASAEAAAR
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