| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2925 |
|---|
| Symbol | |
|---|
| ID | 5710776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3084036 |
|---|
| End bp | 3084908 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641268851 |
|---|
| Product | putative Haloacid dehalogenase-like hydrolase |
|---|
| Protein accession | YP_001534259 |
|---|
| Protein GI | 159045465 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR01459] HAD-superfamily class IIA hydrolase, TIGR01459
[TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.599957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.045296 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCC TGATCGCCTC CCTCGCCGAC ATCGCCGCCC AGTACGACGC GCTCTTCGTG
GACCTCTGGG GCTGCGTCCA TGACGGCATC ACCCCCTTTC CCGAGGCCAT CGCCGCCCTG
CGCGGGTTCA AGCGCGGCGG CGGCACCGTC CTGCTCCTGA CGAACTCCCC GCGCCCCCGC
GCCGGGGTCG AGCAGCAGCT TGCCAGCATC GGCGTGCCTG AGGATTGCTG GCATACCATC
GCCACCTCCG GCGACAGCGC GCGCGCCGCC ATGTTCCGCG GCGTGGTGGG CGAGAAGGTC
TATTTCATGG GCGAGGATCA CGACCAGCGC TTCTTCGAGC CGCTCGCCCT CGTCGACGAC
CCGGTCACGA TCACCCAGGT GCCCCTGCAG GAGGCCGAAG GCATTGTTTG CACAGGACCT
TTCGACCCCA CCGCCGACCC GTCGGTGAAC CGCGCGGACT TCCTCTATGC CAAGCAGAAG
CGGATGAAAC TGCTCTGCGC CAACCCCGAT ATCGTGGTCG ATCGCGGCGC GCGGCGGGAG
TGGTGCGCAG GTGCGCTGGC GCAGCTTTAT GCCGAGATGG GGGGCGAGAG CCTCTATTTC
GGCAAGCCCC ATCCGCCGAT CTACGACCTC GCCCGCGCGC GGCTGGCCGA GCTTGGCCCC
GTCCCGGCCA ATGACCGTAT CCTGGCCATC GGGGACGGCA TCGCCACGGA TATCCAGGGC
GCCCAGGGCG AGGATATCGA CTCGCTCTTC ATCACCGGCG GGTTGGCCGC CGCCGAGACC
GGCACCACCG ACCAGCCCGA TCCCGACAAG CTCGCAGCCT TCCTCGCCCA GAGCCAGGTC
ACCCCCACCT ACGCCATTGG GAAACTGAGA TAA
|
|---|
| Protein sequence | MTRLIASLAD IAAQYDALFV DLWGCVHDGI TPFPEAIAAL RGFKRGGGTV LLLTNSPRPR
AGVEQQLASI GVPEDCWHTI ATSGDSARAA MFRGVVGEKV YFMGEDHDQR FFEPLALVDD
PVTITQVPLQ EAEGIVCTGP FDPTADPSVN RADFLYAKQK RMKLLCANPD IVVDRGARRE
WCAGALAQLY AEMGGESLYF GKPHPPIYDL ARARLAELGP VPANDRILAI GDGIATDIQG
AQGEDIDSLF ITGGLAAAET GTTDQPDPDK LAAFLAQSQV TPTYAIGKLR
|
|---|
| |