| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2887 |
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| Symbol | gabD |
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| ID | 5710738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3043208 |
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| End bp | 3044686 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268813 |
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| Product | NADP(+) dependentsuccinate-semialdehyde dehydrogenase |
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| Protein accession | YP_001534221 |
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| Protein GI | 159045427 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00129207 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.447595 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGATA CAGTGACGGA ATTGCGGGAA CACCTGAAGG ATCCCGCGCT CCTGGCCAGC
AAGGCCTATT TCGCGGGTGC CTGGACGGAT GCGGACAGTG GCGCGACCTT CCCGGTGACC
AACCCGGCGC GCGGCGACGT GATCGCCCAT GTGCCCGACC TGGGCCGGGC CGAGACCGCC
CGCGCCATCG CCGCCGCAGA CGCCGCGCAG AAGCCCTGGG CCGCGCGCAC CGCCAAGGAC
CGCGCGCAGG TGTTGCGGCG CTGGTTCGAC CTGATCGTCG GGAATGCCGA CGACCTGGCG
CGGATCCTGA CCGCCGAGAT GGGCAAGCCG CTGGCCGAAG CCAGGGGCGA GGTGATGTAT
GGCGCGTCTT TCGTGGAATG GTTCGCCGAA GAGGCCAAGC GCCTCTATGG CGAGACCATC
CCGGGTCATT TGCCGGACGC GCGCATCCAG GTGATCCGCC AGCCCATTGG CGTGGTGGGG
GCGATCACCC CGTGGAACTT CCCCATTGCC ATGATCACCC GCAAGGCCGC GCCGGCGCTG
GCGGCCGGCT GCGCCTTCCT GTCGAAACCG GCCGAGGACA CGCCGCTCTC GGCGCTGGCG
CTGGCGGTTC TGGCCGAACG GGCGGGGATC CCTGCAGGGC TCTTCGCCGT GCTGCCGAGC
AGTGATTCCT CGGCCATTGG CAAGGAATTC TGCGAGAACC ATACCGTGCG CAAGCTGACC
TTCACCGGCT CGACCCAGGT GGGGCGCATC CTGCTGGCGC AAGCCGCCGA TCAGGTGAAG
AAATGCTCGA TGGAGCTGGG CGGCAACGCG CCCTTCATCG TGTTCGACGA TGCCGATCTC
GACAAGGCGG TCGAGGGGGC GATGGCCTGC AAGTTCCGCA ACGCGGGCCA GACCTGCGTC
TGCGCCAACC GGATCTATGT GCAGGACGGG GTCTATGACG CCTTCGCCGA GAAGCTGGCC
GCCGCGGTGG AGGAGCTGAA GGTCGGGGAT GGCGCGGCCG AGGGTGTGAC CATCGGCCCG
CTGATCAATA TGCCCGCGGT GGAGAAGGTG CAGGATCACC TCGACGACCT GCGCGCCAAG
GGTGGAACGG TCGTGACCGG GGGCGAGACA CATCCCCTCG GCGGCACGTT CTTCACCCCC
ACGGTGGTGA CCGGCGTGAC GCAGGAGATG AAAGTGGCGC GGGAGGAAAC CTTCGGCCCG
GTCGCGCCGC TCTTCCGGTT CACGGAGGAG GACGAGGTCA TCGCCATGGC CAATGACACG
ATCTTCGGGC TCGCGGGGTA TTTCTACGCC CGCGACATCG GCCGGATCAC CCGGGTGTCC
GAGGCGCTGG AATACGGCAT CGTCGGGATC AACACCGGCA TCATCTCGAC CGAAGGGGCG
CCCTTCGGCG GGGTCAAGCA ATCGGGGCTT GGGCGCGAAG GGTCCCGCCA CGGGATCGAC
GAGTATCTCG AGATGAAATA CATCTGCCTG TCGATCTGA
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| Protein sequence | MLDTVTELRE HLKDPALLAS KAYFAGAWTD ADSGATFPVT NPARGDVIAH VPDLGRAETA
RAIAAADAAQ KPWAARTAKD RAQVLRRWFD LIVGNADDLA RILTAEMGKP LAEARGEVMY
GASFVEWFAE EAKRLYGETI PGHLPDARIQ VIRQPIGVVG AITPWNFPIA MITRKAAPAL
AAGCAFLSKP AEDTPLSALA LAVLAERAGI PAGLFAVLPS SDSSAIGKEF CENHTVRKLT
FTGSTQVGRI LLAQAADQVK KCSMELGGNA PFIVFDDADL DKAVEGAMAC KFRNAGQTCV
CANRIYVQDG VYDAFAEKLA AAVEELKVGD GAAEGVTIGP LINMPAVEKV QDHLDDLRAK
GGTVVTGGET HPLGGTFFTP TVVTGVTQEM KVAREETFGP VAPLFRFTEE DEVIAMANDT
IFGLAGYFYA RDIGRITRVS EALEYGIVGI NTGIISTEGA PFGGVKQSGL GREGSRHGID
EYLEMKYICL SI
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