| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2849 |
|---|
| Symbol | |
|---|
| ID | 5710700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3006406 |
|---|
| End bp | 3007137 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641268775 |
|---|
| Product | short-chain dehydrogenase/reductase |
|---|
| Protein accession | YP_001534183 |
|---|
| Protein GI | 159045389 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.154596 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGA CGATCCTGAT CACCGGGGCG AGCGGCGGCA TCGGGGCCGC CGTGGCCGAC
AGGTTCCTGG CCGAGGGCTG GGAGGTCGGG CTTCTGGCGC GGCGGGCGGC GGCGCTGGAG
GAGGTGCGGG CAGGCCGCGC GAACGGGCAT GTCCTGGTCG CGGATGTGGC CGATCCGGAG
GCGGTGGCGG CGGGTTTTGC CAGCTTCGAG GCGGCGGTCG GGCGGCTCGA TGTGCTGTTC
AACAACGCAG GCATCTTCGT GCCCGCCGCG ATGATCGACG AGGTGCCGCT GGCCGATTGG
GACCGGGCGG TGGCGGTGAA CCTGACGGGG ATGTTCCTCG CTGCACGGGC GGCCTTCGGG
CAGATGCGGC GGCAGGACCC GGCGGGGGGG CGGATCATCA ATAACGGGTC GATCTCGGCC
CATGTGCCGC GGGAGGGGGC GGTTTGCTAT ACCGCCACGA AACACGCGAT CACCGGGCTG
ACCAAGCAGC TGTCGCTGGA TGGGCGCGCG CTGGGCATTG CCTGTGGGCA GATCGATATC
GGCAATGCGC GCACGGAGCT GCTGGAGGGG ATCGACGCGG CGGGCCGGGC GCGCGGGGAG
CCGCCGGTGC CGATGATCGA GACCGATCTG GTGGTGGACG CGGTGTGGCA GATGGCGGCG
CTGCCGCTTG AGGCCAATGT CCAGTTCATG ACGCTGATGG CGACGAAAAT GCCCTATATC
GGACGCGGAT GA
|
|---|
| Protein sequence | MSGTILITGA SGGIGAAVAD RFLAEGWEVG LLARRAAALE EVRAGRANGH VLVADVADPE
AVAAGFASFE AAVGRLDVLF NNAGIFVPAA MIDEVPLADW DRAVAVNLTG MFLAARAAFG
QMRRQDPAGG RIINNGSISA HVPREGAVCY TATKHAITGL TKQLSLDGRA LGIACGQIDI
GNARTELLEG IDAAGRARGE PPVPMIETDL VVDAVWQMAA LPLEANVQFM TLMATKMPYI
GRG
|
|---|
| |