| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2679 |
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| Symbol | |
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| ID | 5713577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2836269 |
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| End bp | 2838797 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641268603 |
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| Product | putative ABC transporter permease |
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| Protein accession | YP_001534013 |
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| Protein GI | 159045219 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0339343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.926867 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTGG CCGTCGCGGG CCGGATCGCC CGGCGGGAAT TGCGCGGCGG GGTCCGCGGG
TTCCGGGTCT TCCTGTTGTG CCTGGTGCTG GGCGTGGCGG CGATTGCCGC CGTGGGCTCA
GTCCGCGTGG CGATCCAGCA GGGGCTGGAG CGCGAAGGCG CGGTGATCCT TGGCGGCGAT
GGCCAGATGG AGTTCACCTA CCGCTTCGCC GAGCCGGATG AACTGGCGTG GATGGAAGAG
AACGCGCTCG AAGTCTCTGA AATCGTGGAG TTCCGCTCCA TGGTCGTGGT GGACGGGCCC
GAGGGACCCG AACGCGGGCT GACCCAGGTC AAGGCGGTCG ACGACCTCTA TCCGCTGAAG
GGCGCGGTGG TGCTGGAGCC CGCGATCCCC CTGGCCGAGG CCTTGGGCGG CGAGATCCCC
GGCGCGGTCA TGCAGCGGGT TCTGATCGAC CGGATGGGGC TGGAGATCGG CGACACCTTC
CGGCTGGGCA CGCAGGAGTT TCGCCTCACC GCCGCGCTGG AGCGCGAGCC GGACAGTGCC
GGGGGCGGGT TCGGCCTTGG CCCCACCACC ATCCTGCGCA CCGAGGCGCT GGCCGAGAGC
GGCCTGATCG GCCCCGGCAC CCTCTACGAG ACCGAGTACC GCCTCGCGCT GCCCGAGGAT
GCGGACCTGC AGGCGCTGGA GGAGGAGGCC GAGGCGCTCT TCCGCGACAC CGGCATGCGC
TGGCGCGACA GCCGCAACGC CGCGCCGGGG GTCGAACGCT TCGTCGAACG GATCGGGTCG
TTTCTGGTGC TCGTCGGGCT GGCGGGGCTC GCCGTCGGCG GCGTCGGCAT CTCGGCGGCG
GTGCGCGCCT ATCTCGACGG CAAGACCCAG GTGATCGCGA CGCTCAAGAC CCTTGGCGCC
GAGGGGGGCA CGATTTTCGC GGCCTACCTG ATGCAGATCG GCATCCTGAC GGCGATCGGC
GTGGGCCTGG GCCTGGTGCT CGGGGCGGCG ATCCCGATCG TGGCGGCCCC GCTGCTGACC
GCGAACCTGC CCATGCCCGC GGCCTTCGGG CTGCATCCGG GGCCCCTGGC CGAGGCCGCG
CTCTACGGGG TGCTGACGGC GCTGGTCTTC ACGCTCTGGC CGCTCGCCCG GACCGAACAG
GTGCGCGCGG CGGAGCTTTT CCGCGATGCG GCGGCGCCGA AATTCCACCT GCCCAGCCGC
CGCTACATGG TGGCGCTGGG GCTGGCGGTC GCGGCCCTGA TCGGCAGTGC CGTGGCCTTC
TCGGGCATCC CGACCCTGGC GCTCGGCTCG CTCGGCGGGA TCGCCGGGGC GCTTTTGCTG
CTGGTGGGGG CGGCCTGGCT GGTGCGGCGC GCCGCCCGGC GGCTCGCCCG GTCGCGCATG
GTGCGGGGGC GGACCGCTCT GCGCCTGGCC CTGGGGGCCG TGGGCGGACC GGGCGGCGAG
ACGACCTCGG TGGTCCTGTC CCTGGGCCTC GGCCTTGCGG TGCTGGCCGC CGTGGGCCAG
ATCGACAGCA ACCTGCGCAA CGTGATCGCC GAGGAACTGC CCAATGACGC GCCGAGCTAC
TTCTTCGTGG ACATCCAGCC CGACCAGATC GGCGATTTCC TCAGCCGCAC CCGGGGCGAC
CCGGCCGTGC GGCGGGTGGA CAGCGCGCCG ATGCTGCGCG GGGTGATCAC CCGGATCAAC
GGCGAACCTG CCCGCGAGGT GGCGGGCGAT CACTGGGTGC TGCGCGGCGA CCGGGGCGTG
ACCTATGCCA CCGCACCCGG GCCGGACACC CGCATCGTCG AAGGCGCATT CTGGCCCGAG
GATTATGACG GCCCACCGCA GATCAGCTTC GCCGAGGAAG AGGCCCGCGA GTTGGGACTG
GAACTCGGCG ACCGGCTGAC CGTGAACATC CTCGGGCGCG ATATCGAGGG GGAGATCACG
AGCTTCCGGG TCGTGGACTT TTCCACCGCC GGGATCGGGT TTGTGCTGAC CATGAACCCC
GCCGCCCTGC GCGGCGCGCC GCACACCTTC ATCTCCACCG TCTATGCCGA GGAGGCCGCC
GAAGCGCAGC TTCTGCGCGA CGTGGCGGCG GACGCGCCGA ACATCACCGC GATCCGGGTG
CGCGACGCCA TCGACCGGGT GACCGAGGCG CTCTCGGGGC TGGCGGCGGC GACAAGCTAC
GGCGCGGCGG CGACGCTGGT CACCGGCTTC GTGGTGCTGA TCGGGGCTGC GGCGGCGGGC
GAGCGGGCGC GGGTGTTCGA GGCCGCGGTG CTCAAGACCG TGGGCGCGAC CCGGGGGCGG
ATCCTGGCGA GCTTCGCGCT GCGCTCGGCG ATGCTGGGGC TGGCGGCGGG GCTGGTGGCG
ATCTTCGCCG GCGGGCTGGC GGGCTGGGGG GTGATGACCT TTGTGATGGA GGCGGGCTAC
CGGTTCGAGC CCGTCTCGGC GCTGGCCATC GTCACCGGCG GGGCGCTGGC GACCCTGCTG
GCGGGGCTTG CCTTCGCCTG GCGGCCCCTG GCCACCCGCC CCGCCCGGAC CCTCCGCGCC
CGGGAGTAG
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| Protein sequence | MNLAVAGRIA RRELRGGVRG FRVFLLCLVL GVAAIAAVGS VRVAIQQGLE REGAVILGGD
GQMEFTYRFA EPDELAWMEE NALEVSEIVE FRSMVVVDGP EGPERGLTQV KAVDDLYPLK
GAVVLEPAIP LAEALGGEIP GAVMQRVLID RMGLEIGDTF RLGTQEFRLT AALEREPDSA
GGGFGLGPTT ILRTEALAES GLIGPGTLYE TEYRLALPED ADLQALEEEA EALFRDTGMR
WRDSRNAAPG VERFVERIGS FLVLVGLAGL AVGGVGISAA VRAYLDGKTQ VIATLKTLGA
EGGTIFAAYL MQIGILTAIG VGLGLVLGAA IPIVAAPLLT ANLPMPAAFG LHPGPLAEAA
LYGVLTALVF TLWPLARTEQ VRAAELFRDA AAPKFHLPSR RYMVALGLAV AALIGSAVAF
SGIPTLALGS LGGIAGALLL LVGAAWLVRR AARRLARSRM VRGRTALRLA LGAVGGPGGE
TTSVVLSLGL GLAVLAAVGQ IDSNLRNVIA EELPNDAPSY FFVDIQPDQI GDFLSRTRGD
PAVRRVDSAP MLRGVITRIN GEPAREVAGD HWVLRGDRGV TYATAPGPDT RIVEGAFWPE
DYDGPPQISF AEEEARELGL ELGDRLTVNI LGRDIEGEIT SFRVVDFSTA GIGFVLTMNP
AALRGAPHTF ISTVYAEEAA EAQLLRDVAA DAPNITAIRV RDAIDRVTEA LSGLAAATSY
GAAATLVTGF VVLIGAAAAG ERARVFEAAV LKTVGATRGR ILASFALRSA MLGLAAGLVA
IFAGGLAGWG VMTFVMEAGY RFEPVSALAI VTGGALATLL AGLAFAWRPL ATRPARTLRA
RE
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