| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2436 |
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| Symbol | |
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| ID | 5714092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2577535 |
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| End bp | 2579637 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641268359 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001533771 |
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| Protein GI | 159044977 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAAAT CATTGGAAAC GCAGCTGCTT GAAAGTCGGT GGGACGACGA GGTCGCCAAG
GGCATGAGCG AATCGGAACT GTTGCTCTAT CGGTCGAACA TCCTCGGCGC CGACAAGCGG
GTGACGAATT ACGGCGGTGG CAACACATCG GCCAAGGTGA TGGAGGCCGA CCCCCTGACC
GGCGCGCAGG TCGAGGTGCT TTGGGTCAAA GGGTCCGGCG GGGATATCGG CTCGATCAAG
ATGGACGGGT TCGCGACGCT TTACATGGAC AAGCTGCGCG CGCTGAAGGG GCTGTATCGC
GGGGTCGCGT TCGAGGATGA GATGGTCAGC TACCTGCCGC ATTGCACCTT CCGGCTGAAC
CCGCGCGCGG CCTCCATCGA CACGCCCCTG CACGCTTACG TCCCGCGCAA GCACGTCGAT
CACGTCCATG CCGATGCGAT CATCGCCATC GCCGCCTCCG ACAATTCGAA GGAGCTCACG
CAGGAGATTT TCGGAAACCG GATCGGCTGG CTGCCGTGGA AGCGGCCCGG CTTCGAGCTG
GGCCTGTGGT TGGAGAAATT CTGCCGGGAG AACCCCGAGG CGGATGGTGT CGTGCTCGAA
AGTCACGGGC TGTTCACCTG GGCCGACACC GCGAAGGAGT GCTACGATCA GACGATCGAC
GTGATCAACG TGGCGACCCG GTGGCTCGCC GAGCGCAGCG CGGGTGTCCC GGCCTTCGGC
GGGGCGATCC ACGAGAGCCT TCCGGCCGCG GCCCGCCGCG AGGTCGCCGC CCGGCTGATG
CCCGCCATCC GCGGTTTCGT GTCGGACAAT CAGCACATGG TTGGCCATTT CAATGACAGC
GACGCGGTGC TGGAATTCGT GAACGCGCGG GACATGGAGG CGCTCGCGGC GTTGGGCACC
TCCTGCCCGG ACCATTTCCT GCGCACGAAG ATCCGGCCCC TCGTGGTGCC GTTCGATCCG
GCGCAGAATA ACATCCTGGC GGTGCTGTCG GAGCTGCCGG ACCAGGTTGC GGCTTACCGT
GAGGCCTATG CCGCCTATTA CGCGCGCTGC AAACATGACG ACAGCCCGGC CCTGCGCGAC
CCGAACGCGG TGGTCTATCT GGTGCCCGGG GTGGGCATGA TCACCTTTGC CAAGGACAAG
GCCACGGCCC GGATATCGGG CGAGTTCTAT GTCAACGCGA TCAACGTGAT GCGCGGCGCG
TCGGCGGTCA GCACGTACCA GGGCCTGCCG GAACAGGAAG CTTTCGATAT CGAGTACTGG
TTGCTGGAAG AGGCCAAGCT GCAGCGCATG CCGAAACCGA AATCTCTTGC CGGCCGCGTG
GCCCTCGTCA CCGGCGGTGC GGGCGGGATC GGGGCGGCCA CGGCCGAGCG GTTCCTGGCC
GAAGGTGCCT GCGTGGTTCT GGCGGATATC AACGAGGACA GCCTGGCATC GACGCAGGAG
AGGTTGTCGG AGCGGTTTGG CGCGGATGTC GTCCGCTCGG TCGTCATGAA CGTGACGCGC
GAAGAGGCCG TCGCGGCGGC CTTTGCGGAG GCGTCGGTGG AATTCGGCGG GGTGGATATC
CTGGTGTCCA ACGCCGGGAT TGCCTCCTCC GCGCCGATCG AGGAGACGTC GCTGGCGCTG
TGGAACAAGA ACATGGACAT TCTGTCCACC GGTTACTTCC TGGTCAGCCG CGCGGCGTTC
AAGCTGATGC GGGTGCAGGA CATGGGCGGC GCGGTGGTGT TCGTGGCCTC CAAGAACGGA
TTGGCCGCGT CACCGAATGC GGCGGCCTAC TGCACGGCCA AGGCGTCGGA AATCCATCTG
GCCCGGTGCC TGGCCCTTGA AGGCGCGGAG GCCGGCATCC GCGTCAACGT GGTGAACCCG
GACGCGGTAC TGCGGGGCTC CAAGATCTGG GAGGGCGACT GGCTGGAACA GCGCGCGGGC
ACCTATGGCA CCGACAAGGA CGGGCTGGAG GAGATGTATC GCCAACGCTC TCTGCTCAAG
CGGTCGGTTC TGCCGGAAGA TATCGCCGAG GCCTGCTATT TCTTCGCCGC GGACGCGTCG
TCGAAGTCCA CGGGCAACAT CATCAACGTG GACGCGGGCA ATGTGCAAGC GTTCACACGC
TAG
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| Protein sequence | MLKSLETQLL ESRWDDEVAK GMSESELLLY RSNILGADKR VTNYGGGNTS AKVMEADPLT
GAQVEVLWVK GSGGDIGSIK MDGFATLYMD KLRALKGLYR GVAFEDEMVS YLPHCTFRLN
PRAASIDTPL HAYVPRKHVD HVHADAIIAI AASDNSKELT QEIFGNRIGW LPWKRPGFEL
GLWLEKFCRE NPEADGVVLE SHGLFTWADT AKECYDQTID VINVATRWLA ERSAGVPAFG
GAIHESLPAA ARREVAARLM PAIRGFVSDN QHMVGHFNDS DAVLEFVNAR DMEALAALGT
SCPDHFLRTK IRPLVVPFDP AQNNILAVLS ELPDQVAAYR EAYAAYYARC KHDDSPALRD
PNAVVYLVPG VGMITFAKDK ATARISGEFY VNAINVMRGA SAVSTYQGLP EQEAFDIEYW
LLEEAKLQRM PKPKSLAGRV ALVTGGAGGI GAATAERFLA EGACVVLADI NEDSLASTQE
RLSERFGADV VRSVVMNVTR EEAVAAAFAE ASVEFGGVDI LVSNAGIASS APIEETSLAL
WNKNMDILST GYFLVSRAAF KLMRVQDMGG AVVFVASKNG LAASPNAAAY CTAKASEIHL
ARCLALEGAE AGIRVNVVNP DAVLRGSKIW EGDWLEQRAG TYGTDKDGLE EMYRQRSLLK
RSVLPEDIAE ACYFFAADAS SKSTGNIINV DAGNVQAFTR
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