| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2431 |
|---|
| Symbol | |
|---|
| ID | 5714087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2571923 |
|---|
| End bp | 2572909 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641268354 |
|---|
| Product | (monosaccharide) transport system permease protein |
|---|
| Protein accession | YP_001533766 |
|---|
| Protein GI | 159044972 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.790241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG CCGACCGCAT GATCCCCGAC CGCCTGCGCT CTCCGATGGA GCAGCGCCTC
AAGAGCTGGG AGACGCTTCT TTTGCTGGTG GCCATCGGCA TCTTCGTCGC CAACAGCTTC
GCCTCCCCCT ATTTCCTGAA CGCCTGGAAC CTGAGCGACG CAACCTTCAA CTTCACCGAA
AAGGCGATGA TCGCCTTCGC CATGGCGCTG CTGATCATCT CGGGGGAGAT CGACCTGTCG
GTCGCCTCCA TCATTGCGCT GGCCTCGACC GCCATGGGCG CGGCGGTGCA GATGGGCGTC
GGCACGCCCG GGCTGGTGCT GATCGGGCTC GGGGTCGGGC TGCTCTGTGG CGCGTTCAAC
GGTGTGCTGG TCACCCGGAT GGGACTGCCC TCCATCGTCG TGACCATCGG CACCATGAGC
CTGTTTCGCG GCATCAGCTA CATCGTTCTG GGCGACCAGG CCTTCCGGGG CTACCCCGAG
AGCTTCTCCT GGTTCGGCCA GGGCTATGTC TGGTGGGTGA TCTCGTTCGA GCTTGTCCTC
TTCGCCATCA TCGCGGTGAT CTACGCGATG CTTCTGCACA AGACCAATTT CGGCCGCGCG
GTCTACGCCA TCGGCAACAA TGCCACCGGC GCGATGTTCT CGGGCATCCG GGTGCAGCGC
GTGAAATTCA TCCTGTTCCT GCTCACGGGC CTCATGTCCG GCGTCGCGGC GATCTGCCTG
ACCGCGCGCC TCGGCTCCAC CCGCCCCTCC ATCGCGATGG GCTGGGAGCT GGAGGTGGTC
ACCATGGTCG TGCTCGGCGG CGTCAGCATC CTCGGCGGAT CGGGCACCAT CCTGGGCGTC
GTCATCGCCG CCTTCGTGAT GGGGCTTGTG ACCTTCGGGC TCGGCCTGCT GAACGTGCCG
GGGATCGTGA TGTCCATCGT GATCGGCGCG CTGCTGATCG GGGTGATCGC CCTGCCGCGG
CTGTGGTCCA TGTGGCGGGC GCGCTGA
|
|---|
| Protein sequence | MSTADRMIPD RLRSPMEQRL KSWETLLLLV AIGIFVANSF ASPYFLNAWN LSDATFNFTE
KAMIAFAMAL LIISGEIDLS VASIIALAST AMGAAVQMGV GTPGLVLIGL GVGLLCGAFN
GVLVTRMGLP SIVVTIGTMS LFRGISYIVL GDQAFRGYPE SFSWFGQGYV WWVISFELVL
FAIIAVIYAM LLHKTNFGRA VYAIGNNATG AMFSGIRVQR VKFILFLLTG LMSGVAAICL
TARLGSTRPS IAMGWELEVV TMVVLGGVSI LGGSGTILGV VIAAFVMGLV TFGLGLLNVP
GIVMSIVIGA LLIGVIALPR LWSMWRAR
|
|---|
| |