| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2401 |
|---|
| Symbol | |
|---|
| ID | 5714057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2535240 |
|---|
| End bp | 2537828 |
|---|
| Gene Length | 2589 bp |
|---|
| Protein Length | 862 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641268326 |
|---|
| Product | pyruvate phosphate dikinase |
|---|
| Protein accession | YP_001533738 |
|---|
| Protein GI | 159044944 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
|---|
| TIGRFAM ID | [TIGR01828] pyruvate, phosphate dikinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.322611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.628675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAAGA ACGCGCCTTT CACCGAGATC ACAAGGACCG TGGACCTCTC CGCCGAGACC
CACGGCCAAC GCGCGAAATG CATCCAGCGG CTGATCCGGC TCGACATGCC CGTGCCCCAT
ACCGTCGCGC TGAGCTTCGA GACGGTGCAC GGGATCGCGG CGGGTCAAGT CATTGATACA
AGGCCCCTTT TGGGAAGTTT CGGGGCCGAC AGCCTGGTCT CCGTACGGCC CAGCCCGGCG
ATGCAGGAAT GGGGCGGCCC CACGGCGATG CTCGATGTGG GCATGAACGA CACCATGCTG
CTGACCCTGT CGGAAACCAT CGGCGCCGAG GCCGCCCGCG CGCTTTATCT GCGCTTCGTG
CAGGCCTACG CGGTGGAGGT CGCTCGGCTC GATCCCGAGC TGTTCGAGCC AACCGAGCCA
ACTCGCGACG CCCTCGTCCA ATCCCTTGAA ATATATGAAG AAGAAATGGA CGAACCCTTC
CCCCAGGACC CGGCGAATCA GCTCGCCGCG GTGCTGAAAT CCATGGCACG CGCCTGGGAA
GGGACCTCCG CACGGCTGCT GCGCCAGGCC AAGGGCGCGC CGCCTGATGC GGGACTCGGG
CTCGTGGTGC AACGCATGGC GCTGGGCATG GGCGCGGCCG AGAGCGGCTC CGGCGTGATT
CAGTTCGTCA GCTCCGAGAC CGGCCTGGCC CAGATCACCG GCCGCTATCT CAGCCAGTCC
CAGGGCCGCG ACGCGCTCGC CCGCCGGGCC GAGGCGTTGT ACCTGTCCCG CGACAGCCGC
GGCCCGTCCC TCGAAGACGC CTGCCCCGAG GCCTTTGCCG AGCTGCGCGC CTTCGGCGAT
GTGCTGCGCA CCGGGCTGCG CGAGGAGATG CAGATCGAGT TCGCCCTCGA TGCCGGCAAG
CTCAGCGTGC TCGACGCGGT CCGCGTGCCG CGCGCGCCCC GGGCGGCGGT GCGCATCGCC
GTGGCGCTGG CCGAAAGCGG CGTGATCAGC AAGGAGGACG CGATCCTGCG GATCGAGCCG
CGCACCTTGC CCGAACTGCT GCACCGGCAG GTCGCGTTCG ACGCGCAGCG CGACCCGATC
GCCAAGGGCA TGGCCGCCAG CCCCGGCGCG GCGACCGGGC AGCTGGTGTT TTCCGCCACC
GCCGCCCAGG CCTGCGCCGC CCAGGAGACG CCCTGCATCC TGGTCCGGCC CGAAACCTCG
CCCGAGGATA TCCGGGGCAT GCACGCGGCC TCCGGCGTGC TGACCGAGAA GGGCGGCATG
ACCAGCCACG CGGCGGTGAT CGCCAGGGGC CTGGGCAAGC CTTGCGTCGT GGGCACGCGG
GATATCACCC TGGATTTGCG GGCAAAAACC CTGACCACCC GGGATGGGCG CGTGTTTGCC
GAGGGCGACA CGGTGACCCT GGACGGAACC GCCGGGGCTT GTCTCGCCGG GGCGCCGCGG
CTGATGGAGC CGGCGCTCGA CGGGTCCTTC CGCACGCTCA TGGCCTGGGC CGACCAGGCC
CGCGATATCG GCATCCGTGC CAATGCGGAC ACGCCCGCCG ACGCCGAAAC CGCCCGCCGG
TTCGACGCCG AGGGGATCGG GCTGTGCCGG ACCGAGCACA TGTTCTTCGA CGAAGACCGC
CTGACCGTGA TGCACGAGAT GATCTTCGCC GAGACCGGCG AGGCGCGCGG CGCGGCGCTG
GAGCGGCTCT TGCCCATGCA GCGGGAGGAT TTCGTCGACC TGTTCGAGAT CATGCGCGGC
AAGCCGGTCT GCATCCGGCT GTTCGACCCG CCCCTGCACG AGTTCCTGCC GACCTCGCGG
GAGGGCATCT GGAACCTGGC CGAGGCGCTG GACCTGCCGG TCTCGACGGT CACCCACCGG
ATCGAGGCGC TGAGCGAATA CAACCCGATG CTGGGCATGC GCGGCGTGCG GCTCGGCATC
GCGATCCCGG AGATCTACGA GATGCAGGCG CGCGCGATCT TCGAGGCGAC GGTGGATGTC
AGCCTCAAGG GCGCGATCGT GACGCCGGAG ATCATGCTGC CGCTGGTTTC GGCCCGGCGA
GAGGTCGAAC TGCTCAAGAC CAATATCGAT GCGGTCGCCG CCGCGGTGCG CAACGAGCGC
GGCACGCGCT TCGGCTTCCG TCTGGGCGTG ATGGTGGAGA CGCCGCGCGC CGCCCTGAAG
GCCGGGGAGA TCGCCGAGAT CACCGACTTT TTATCATTTG GAACCAATGA CCTGACCCAG
ATGACCTATG GGCTCAGCCG CGACGATGCA GGCCGGTTCA TGGGAACTTA TGTCCAGCAG
GGGGTCTTTG CCGAGGATCC GTTCCATACG CTCGATGCGG ATGGTGTGGG CGAATTGCTC
AACATCGCGG CCGAACGAGG CAGGGCAGTG AAACCTGACT TGACCCTGTC GATTTGCGGC
GAGCATGGGG GCGACCCCGA TTCGATTGAT TTTTGCCGAA AAGCGGGCTT TTCCTACGTT
TCGTGCTCAC CGTTTCGCGT GCCCGTGGCG CGTATGGCCG CAGCCCACCT GGCGCTGACG
GACGCGCCGG TCGAGAAAAA ACCGCGCCGT TTCAACCTGC TCGGACGCGT TCTTCGCAGC
GGAAGCTGA
|
|---|
| Protein sequence | MQKNAPFTEI TRTVDLSAET HGQRAKCIQR LIRLDMPVPH TVALSFETVH GIAAGQVIDT
RPLLGSFGAD SLVSVRPSPA MQEWGGPTAM LDVGMNDTML LTLSETIGAE AARALYLRFV
QAYAVEVARL DPELFEPTEP TRDALVQSLE IYEEEMDEPF PQDPANQLAA VLKSMARAWE
GTSARLLRQA KGAPPDAGLG LVVQRMALGM GAAESGSGVI QFVSSETGLA QITGRYLSQS
QGRDALARRA EALYLSRDSR GPSLEDACPE AFAELRAFGD VLRTGLREEM QIEFALDAGK
LSVLDAVRVP RAPRAAVRIA VALAESGVIS KEDAILRIEP RTLPELLHRQ VAFDAQRDPI
AKGMAASPGA ATGQLVFSAT AAQACAAQET PCILVRPETS PEDIRGMHAA SGVLTEKGGM
TSHAAVIARG LGKPCVVGTR DITLDLRAKT LTTRDGRVFA EGDTVTLDGT AGACLAGAPR
LMEPALDGSF RTLMAWADQA RDIGIRANAD TPADAETARR FDAEGIGLCR TEHMFFDEDR
LTVMHEMIFA ETGEARGAAL ERLLPMQRED FVDLFEIMRG KPVCIRLFDP PLHEFLPTSR
EGIWNLAEAL DLPVSTVTHR IEALSEYNPM LGMRGVRLGI AIPEIYEMQA RAIFEATVDV
SLKGAIVTPE IMLPLVSARR EVELLKTNID AVAAAVRNER GTRFGFRLGV MVETPRAALK
AGEIAEITDF LSFGTNDLTQ MTYGLSRDDA GRFMGTYVQQ GVFAEDPFHT LDADGVGELL
NIAAERGRAV KPDLTLSICG EHGGDPDSID FCRKAGFSYV SCSPFRVPVA RMAAAHLALT
DAPVEKKPRR FNLLGRVLRS GS
|
|---|
| |