| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2342 |
|---|
| Symbol | |
|---|
| ID | 5713997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2474765 |
|---|
| End bp | 2475718 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641268266 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001533679 |
|---|
| Protein GI | 159044885 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.488163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.194568 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGTG AAGCGCAAGT CAGTGCTCTG GCGAGTATCG CAGGCGGGGT CTGGTGGGTC
CTCCAGAATA TCGGATTGGC TTTCTACAAC ACCGCCTGGG CGATCCTGAA CCCGGGCCAA
TGGCTTGGCT GGATCGGTGG GCTTGAGACG ACCGAAGACA AGGAAGCGCT GATGCGCTTT
GCCTATTACG GCGCCTCGGT GGAGTTCTTC TTTTTCCTGC TGACGGCTTT CCTCGTGGCC
CTTGCCATCG GCATCGCGCG GCCCCGGGCC ATGTGGGGCA TGGTGATCGG GCTGGAAGGG
TTCGCGAACG TGGTCGGGCG CGTCGCGGCC TGGGCGGGTT TGCTGATGGT GGTTCAGCAG
ATCCTGATCG TGATGCTGCA GCGGTTCTTC CTCGTCAGCC AGATTTCAAT CGGGCCGTTC
GGGTATACAT TTACCAAGGA TCTCAGTTGG TTCGGCGAGG AACTTAAACT TTATAACGCG
ATCGTCGTCT GCCTGTGCTG CGCCTATACG TTCGTTCAGG GCGGGCATGT GCGCGTGGAT
CTGGTCTATT CGGTGGTCAA GCACCGAACC AAGAAGGTGA TCGACATGGC GGGCAGCCTT
CTGTTCATGA TGCCGGCCAT GGTGCTGATC TGGCTCTATT CGTGGTTTTT CATGTGGCGC
CACCTGATCA CACCCAAGAT CAGCGCGTCC GACCCGTTCG ACCGGATGAT GTTGAAGGCG
CGCGCGGTGC GCTGGAATGT CGAAACCGTG GGCTTCAGCC CGCAAGGGTT CGACGGATAT
TTCCTGTTCA AGATCCTGAT CTGCCTGTTC GTGGCCATGG TCTTCCTGCA GGCGGTGGCG
TTCTTCTTTC GCTCTTTCCA GGAATGGCGC GAGGGCGAGG AGAGCGCTGG CAAGTATCAC
GACAAGGATG CCTTGGGTGA CGAAGACGCC GAACGCGTCG CGGAAATCCA CTAG
|
|---|
| Protein sequence | MESEAQVSAL ASIAGGVWWV LQNIGLAFYN TAWAILNPGQ WLGWIGGLET TEDKEALMRF
AYYGASVEFF FFLLTAFLVA LAIGIARPRA MWGMVIGLEG FANVVGRVAA WAGLLMVVQQ
ILIVMLQRFF LVSQISIGPF GYTFTKDLSW FGEELKLYNA IVVCLCCAYT FVQGGHVRVD
LVYSVVKHRT KKVIDMAGSL LFMMPAMVLI WLYSWFFMWR HLITPKISAS DPFDRMMLKA
RAVRWNVETV GFSPQGFDGY FLFKILICLF VAMVFLQAVA FFFRSFQEWR EGEESAGKYH
DKDALGDEDA ERVAEIH
|
|---|
| |