| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2288 |
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| Symbol | |
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| ID | 5713942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2417255 |
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| End bp | 2418247 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641268211 |
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| Product | putative TRAP transporter solute receptor |
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| Protein accession | YP_001533625 |
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| Protein GI | 159044831 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.932603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGGTG CGGGCATCCT CGCGGTTGCG ACGCTCCAGT TCCCCGGGGG CGCCTTGGCC
GAGCGGTACA AGGTCACCTC CCTCGCACCG GGCCTCACGC CTTTCGTGGT CAACACGACC
ATTGCCCGGG TCGTGAACAC CCATGTGGAC GGCATCGAGT TACAGGTCAG CGCCACGGGC
ACGGCCACAC GGCACATGAT GGACGCCGCC ACCGGACGCG TCGACTTTCT GTTCGGTGCA
CCCACCATCA ACTGGATGAT GGTCAATCGC CTCGGCCCAT TCCAGCATTT CGAGACGGCA
CCCGCGCTGG AGCAAAACGT GGGCATGATC TTCGCCTACC AGATGGGGCC TTACCACTAC
ATCACGCGCG CGGGGTCCGG CATCGAGAGC CTGGCCGATC TGCGAAGTCG GACCGTGTTC
GCGGGCCCTC CCGGCGGCGC CGCCACCGAG GTGGTCCTGC GTGTCATCGA ACAATCCACC
GGTATCACGC CGGGCGAGAT GAAGCTCCAG GCCTTCGGGT TCGACGCCGC GATCCAGGCA
TTTCAGGATG GCAAGATCGA CGTGATCGTC CTGCCCACGA ACCTGCCAAG CGCCGCGGTC
CAGCAATTCG CCCTGACAAG CCGGATCCGG TTGCTGGATG TCGATCTGCG CAATGTGACG
ATCCGAGCGG AGACCGGCGG AACCGCCAAC GAGATACCCC CGGATGCCTA CGGGCCGAAC
CAGGTCAACG ACACGGCCAC GCGCACCCAT GGATCGATTG TGAATTTCAG CGCCGGGATG
CATGTCCCGG AACATGTCGT CTACGAAGTG ACCCGGGCGA TCTGGGAAAA CCTCGGCGAC
ATCCATAGCG CCGCCGACTG GATGCCCGGC ACGATCACGC CTGAAATGGC GCTCTCTCTG
GTCTCTGGGC GGCTGCATCC CGGGGCAGAG CGCTACTACC GTGAGGCCGG CTGGCCGATC
CCCGAGGCCA TCACATTTCC CCCACCGGGC TGA
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| Protein sequence | MLGAGILAVA TLQFPGGALA ERYKVTSLAP GLTPFVVNTT IARVVNTHVD GIELQVSATG
TATRHMMDAA TGRVDFLFGA PTINWMMVNR LGPFQHFETA PALEQNVGMI FAYQMGPYHY
ITRAGSGIES LADLRSRTVF AGPPGGAATE VVLRVIEQST GITPGEMKLQ AFGFDAAIQA
FQDGKIDVIV LPTNLPSAAV QQFALTSRIR LLDVDLRNVT IRAETGGTAN EIPPDAYGPN
QVNDTATRTH GSIVNFSAGM HVPEHVVYEV TRAIWENLGD IHSAADWMPG TITPEMALSL
VSGRLHPGAE RYYREAGWPI PEAITFPPPG
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