| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2078 |
|---|
| Symbol | tpiA |
|---|
| ID | 5713073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2198730 |
|---|
| End bp | 2199473 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641268000 |
|---|
| Product | triosephosphate isomerase |
|---|
| Protein accession | YP_001533416 |
|---|
| Protein GI | 159044622 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0149] Triosephosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGGA AACTGGCGGC GGGAAACTGG AAGATGAACG GGCTGCGCGC GGCCCTCGCG
GAAGCGGAGG CGATCACGGC CGCGGCCGCT GCGGACGGAC CCGAGGTCCT GCTCTGCCCG
CCCGCGACGC TCCTGGCGCC CATGGCGGCG CAGGCCGAGG GCACCGCCCT GCAGATCGGC
GGGCAGTATT GCCATCCCGC CCCCTCGGGC GCCCATACGG GCCATGTCTC GGCGCCGATG
CTGCGCGATG CCGGGGCCAG CTACGTGATC GTGGGGCATT CCGAACGGCG CCAGGACGAC
GGCGAGCGCG ACGCGGATGT GCGCGCCCAG ACGCTCGCGG CCTGGCAAGC CGGGCTGACC
GCCATCGTCT GCGTGGGCGA GACCGAGGCC GAACGCGATG CCGCCAACAC GCTGGCGATC
ATCGGCGGGC AACTGGCGGG CTCCATCCCC GATACCGCCA CGGGTGCCAA TCTCGTGGTG
GCCTATGAGC CGGTCTGGGC CATCGGCACG GGCCGGGTGC CCAGCGTCGA CCAGATCGGC
GAGGTGCATG ATTTCATCCG CGCGCGACTG GAACAACGTT TCGGCGAAGG CGTGGGGCGG
TCGGTACGGC TGCTCTATGG CGGCTCGGTC AAACCCGGCA TCGCCGCCGA GATCTTCGCC
GTGTCCAACG TGGACGGGGC GCTTGTGGGC GGCGCATCCC TGAAGGCGGC GGATTTCACC
GGGATCATCG CCGCACTGGG CTGA
|
|---|
| Protein sequence | MRRKLAAGNW KMNGLRAALA EAEAITAAAA ADGPEVLLCP PATLLAPMAA QAEGTALQIG
GQYCHPAPSG AHTGHVSAPM LRDAGASYVI VGHSERRQDD GERDADVRAQ TLAAWQAGLT
AIVCVGETEA ERDAANTLAI IGGQLAGSIP DTATGANLVV AYEPVWAIGT GRVPSVDQIG
EVHDFIRARL EQRFGEGVGR SVRLLYGGSV KPGIAAEIFA VSNVDGALVG GASLKAADFT
GIIAALG
|
|---|
| |