| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2054 |
|---|
| Symbol | |
|---|
| ID | 5713049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2173618 |
|---|
| End bp | 2174742 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641267976 |
|---|
| Product | histone deacetylase family protein |
|---|
| Protein accession | YP_001533392 |
|---|
| Protein GI | 159044598 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.24531 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCCGC TTTTCATCGG GGCCGAGATC TATCGCAACT CGACCTATGG CGGCTGGCAT
CCGTTGCGCA TCCCGCGGGT GTCGACGGCC ATGGACCTGT CCCGTGCGCT GGGCTGGTTG
CCGCGCGGAC AGTACCGCGT CAGCCCGCGC GCCAAGCCCG CGGCCCTGCA TATCTGGCAC
GACCCGGCCT ATGTGGCCGC GCTGGTGCAG GCCGAGGCCG ATGGTACGGT CAGCGATGCC
GTGCGCGCTC GGCACAACCT GGGCACGCCC TCCAACCCCG TCTTCGGCGA AGTGTTCCGG
CGTCCGGCCA CGGCGGCGGG CGGCTCCATG CTGGCGGGGG CGATCCTCGG GGCCGGGCCC
GGCGTGGTCT ATCACCCGGC GGGCGGCACC CATCACGGGC TGCCGGACCG GGCCAACGGG
TTCTGCTATC TCAACGATCC GGTGCTGGCG ATGTTGTCGC TGCGGCAGGC CGGGCTGCGC
CGCATTGCGT ACGTGGATAT CGACGCGCAT CATTGCGACG GGGTGGCGGT GGCCTTCCGG
GGCGATCCGG ATGTGTTGAT GATCTCGGTG CACGAGGAAA AACGCTGGCC CTTCACCGGC
GGGCTGGAGG AGACTGAAGG CGGCTCAGCC CTCAACCTGC CGGTGCCGCG GGGGCTGAAC
GATGCGGAGA TGGCCTTCAT CCGCGACGCA CTGATCGTGC CTGCGGTGGC AGCCTTCGCG
CCCGAAGCCA TCGTGTTGCA ATGCGGCGCG GACGCGGTGG AGGAAGACCC CCTGTCGCGT
CTTGCCTTGT CCAACAACGC CCATTGGGCA GTGGTGTCCG CCTTGGGGGC GCTGACCGAC
CGGTACCTGG TGCTGGGGGG CGGGGGCTAC AACCCCTGGA CGGTCGGGCG CCTGTGGGCC
GGGGTATGGG CGACCCTGAA CGCGCTGGAG ATCCCGGAGC GTTTGCCGCC CGAGGCCGAG
GCGGTGCAGC GGGGCCTGTC CTGGGCCGGA GCGAAGATGA CCCGGATGCC GGAACCGGCC
CTGTTCACCA CTTTGCGCGA TGCGCCGCGT CCGGGACCCG TGCGCGACAT GCTGCGCGCG
CGTGTGGCGG TGTTGCAGGC ACGGTCCGCG GTTTTGGTCG GCTAG
|
|---|
| Protein sequence | MTPLFIGAEI YRNSTYGGWH PLRIPRVSTA MDLSRALGWL PRGQYRVSPR AKPAALHIWH
DPAYVAALVQ AEADGTVSDA VRARHNLGTP SNPVFGEVFR RPATAAGGSM LAGAILGAGP
GVVYHPAGGT HHGLPDRANG FCYLNDPVLA MLSLRQAGLR RIAYVDIDAH HCDGVAVAFR
GDPDVLMISV HEEKRWPFTG GLEETEGGSA LNLPVPRGLN DAEMAFIRDA LIVPAVAAFA
PEAIVLQCGA DAVEEDPLSR LALSNNAHWA VVSALGALTD RYLVLGGGGY NPWTVGRLWA
GVWATLNALE IPERLPPEAE AVQRGLSWAG AKMTRMPEPA LFTTLRDAPR PGPVRDMLRA
RVAVLQARSA VLVG
|
|---|
| |