| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2011 |
|---|
| Symbol | |
|---|
| ID | 5713006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2130480 |
|---|
| End bp | 2131292 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267935 |
|---|
| Product | putative ABC transporter inner membrane component |
|---|
| Protein accession | YP_001533351 |
|---|
| Protein GI | 159044557 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3639] ABC-type phosphate/phosphonate transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01097] phosphonate ABC transporter, permease protein PhnE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.050434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0106691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCC GGCTGGAGGA TATGGTCGGC ACGCCCTGGC GCAAGCCGCC TTTCGTGCGC
AGCGCGGCAC TGCGCTGGAC CCTGATCGTG GGCACCATCG CCTATCTGAT TGCCGCCTTC
GCCACCATCG AGGTCGATTG GGGCCGGGTC TATATCGGGC TGGAGCGGGG CTGGCAGTTC
ATCCTGGGCT TTGCCAATCC GGATTTCACC TCGCGTGGCA AGGATATCTG GGAGGGGCTG
CTGGAGAGCA TCGTGATGAC GGTGGCGGCC TCGGTGGTGG GGATCGCGAT CTCGATCCCC
ATCGCGCTGG GGGCGGCGCG CAACATCGCG CCACTGCCGG TCTACCTGGT GTGTCGGGCG
ATCATCGCCG TGAGCCGGGC GTTGCAGGAA ATCATCGTCG CGATCCTGCT GGTCGCGATC
TTCGGCTTCG GGCCACTGGC GGGGTTCCTG ACCCTGTCCT TCGCGACCAT CGGGTTTCTG
TCGAAGCTTC TGGCTGAAGA CATCGAATCC ATGGACCGGG TGCAGGCCGA GGCGATCAAG
GCCTCGGGCG CGAGCTGGAT GCAGTGGATC AACTACGGCG TGCAACCCCA AGTGATGCCA
CGCCTCATCG GTCTGAGCAT GTACCGGATC GACATCAATT TCCGCGAGAG CGCGATCCTT
GGGCTCGTGG GTGCGGGCGG GATCGGGGCG ACTTTGAACA CCGCCTTCGA CCGCTATGAA
TACAACACGG CGGCGGCGAT ATTGCTGCTG ATCATCGGGA TCGTGATGGC GCTGGAATAC
CTCTCCGGCA TCATCCGGGC GCGGGTGCAA TAA
|
|---|
| Protein sequence | MTARLEDMVG TPWRKPPFVR SAALRWTLIV GTIAYLIAAF ATIEVDWGRV YIGLERGWQF
ILGFANPDFT SRGKDIWEGL LESIVMTVAA SVVGIAISIP IALGAARNIA PLPVYLVCRA
IIAVSRALQE IIVAILLVAI FGFGPLAGFL TLSFATIGFL SKLLAEDIES MDRVQAEAIK
ASGASWMQWI NYGVQPQVMP RLIGLSMYRI DINFRESAIL GLVGAGGIGA TLNTAFDRYE
YNTAAAILLL IIGIVMALEY LSGIIRARVQ
|
|---|
| |