| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1962 |
|---|
| Symbol | |
|---|
| ID | 5712956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2057989 |
|---|
| End bp | 2062884 |
|---|
| Gene Length | 4896 bp |
|---|
| Protein Length | 1631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641267886 |
|---|
| Product | putative modular PKS system |
|---|
| Protein accession | YP_001533303 |
|---|
| Protein GI | 159044509 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | [TIGR00556] phosphopantethiene--protein transferase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0314751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000910515 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAG ACGGTGCCCA CACGCGCCAC GCTGACAACG AACCGATTGC AATCGTAGGC
ATCGCCTCGA TCTATCCCGA GGCGCCGGAC ACGGCCACCT ATTGGCGCAA CATCACCGAC
AAGGTGGATG CGGTGGCCGA TGCGCCGGCC GATTGGTGCG CGGATCTGTT CTTTGACCCC
GAGAGCGCGG ATAACGACCG GATCTACACC AAGCGCGGTG GGTTCCTGCG CGATCTCGCG
GTGTTCGACC CGCTGCGCCA CGGGGTCATG CCGACCTCCA TCGACGGGGG GGAGCCGGAC
CAGTTCCTCG CGTTGCAGGT GGCCGCCGAC GCGGTGGAGG ATGCCGGTTT CGCCGCGCGC
CCCGTCCCCG GCGAACGGGT GGCGGTGATC CTGGGCCGCG GCACCTATAT CAACCGCGGC
TTCACCAGCG TGGTGCAGCA CGGGATCATG GTGGATCGCT TCCTGTCGAT CCTGAAAAAG
CTCCATCCCG ACACCGACGC GGAAGAGCTG GCCGAGGTCA AGGCGCAGCT CAAGGCCTCC
CTGCCGCCCT TCAATGCGGA AATGGCCCCG GCCCTGGTGC CGAACCTGGT GACGGGGCGG
ATCTCCAACC GGCTGGACTT CAAGGGCGCC AATTACATCG TGGACGCGGC CTGCGCCTCG
TCGCTCATCG CCATGGATCG CGGGGTTGCG GACCTGCGGG CGGGGCGGTG CGACATGGCG
GTGGTGGGCG GTGTGCATGC CTCCACCCCC GCACCGATCT ACCAGATCTT CTGCCAGCTC
GAAGCGCTGT CGCGGAAGGG GTCGATCAAA CCGTTCTCGG CCAATGCCGA TGGCACGCTT
CTGGGCGAGG GCGTCGGGCT GATGTGCATC AAGCGGCTTT CCGATGCGGA GGCCGCGGGC
GACCGGATCT ACGCGCTGGT GCGCGGGGTC GGCGTGGCCA GCGACGGCAA GGGGCTGGGC
ATTCTCGCCC CCCGGATAGA GGGGGAGACA CTCGCGCTCC AGCGCGCCTA TGAGGATGCC
GGGGTCGATC CGGCCACCGT GGGTCTGATC GAGGCCCATG GCACGGCGAC CGCCCTGGGC
GACGCGACGG AGGTCGAGGC GCTCGTGGGC CTGATGGGGA CGCGCGACAG CGACGCGCCG
TCCTGCGCGC TGGGCTCGGT GAAGTCGATG ATCGGGCATT GCCTGCCCGC CTCGGGCTCG
GCCGGAATCA TCAAGACCGC GCTGGCGCTC TATCACAAGA CCCTGCCGCC CACCTTGCTG
GACGAGGCGA ACCCTGAGTT GGGGATCGAA GGCTCGCCGC TCTACCTGAA CACCGAAACC
CGACCCTGGA TCCACGGGCT GGACACGCCC CGGCGGGCGG GGGTGAACGC CTTCGGCTTC
GGCGGGATCA ATGCCCATAC GGTGCTGGAA GAATATCGCG GCGGGGCGGA GCCTGCACCG
AACCTCACCC GGTCGAGCGA GCTTCTGGTG GCGGGCGCGC CGGATGCGTC GGGACTGAGC
GCACGGCTGG AGGCGCTGAA AACCGCGCTA TCTGGCGACA TGCCCCCGGC AGAGGTCGCG
CGGGTCGAGA ATGCCGCCCC GTGCCCCGGC CCCTGGCGCG CGGCCATCGT GGCCCGGGAC
GCGGGCGATG CCATGGCCAA GATCGACAAG ATCCTCGGCC GGATCGCCAG CGGCAAGGAC
CGGCTCAGGG ATCGCAAGGG GGCGTATCTG AACGCGGCAC CGCTGGCCGC CACGGGCAAG
GTCGCCTTCA TGTTCCCCGG GGAGGGGAGC CAGCATCTGG GCATGCTGCG CGAGATCATG
CTGCATTACC CCCGGATGCG GCAGTGGTTC GACCTGGTGG ACGGGGCCTT CGCGGGCCAT
GGCCGCAACC TGCTGCCGAG CCAGGTGATC TTCCCGCCCC CCGGCACCGC CGAAGAGGGC
GGCGCGCTGT GGCGGATGGA TATCGGGCCA GAGGCGATTT TCGCCGCAAA TCAATCGGTT
GCGGCGCTGT ATGAAAGCAT CGGCTTGCGC CCGGACATGC TGGTCGGCCA TTCCACGGGG
GAATACTCGG CGCTCTTTGC CGCCGGGGTG ACGCGGCGCG AAGATCCGGC CGTTCTCCAG
GCGGAGATGC GCGCGCTCAA CGCGGAATAC GAGGCGATGG CGGCCGAGGG GCTGATCGCC
GAGGGCGCGC TGGTGGCGCT CGGCGCGGTG GATGGCGCGG CGCTGGAGGA CAAGCTGGCC
GGGCGCGACG ATGTTTATCT GGCCATGGAC AACTGCCCCA ACCAGAAGGT CGTGGCGGCG
TTTTCCGACG CGGGCCGCGA CTATGCCCTG AGCCTCGCGC CCGCGCTGGG CGGGTTCGAC
GAGCTCTTGC CGTTCTCGCG CGCCTATCAC AGCCCGGCCT TCGCACCGTT CAGCGCGCGG
CTCGAAGGGT TCCTCGCGGG GATGCAGGTC GCGGCCCCCG AACGCCCGGT CTATTCCTGC
CTGAGCACCG CGCCCTTTCC AGACTCGCCC GACGCGATCC GCAAGCTGAC CGCCGACCAA
TGGTCCGGGC GGGTGCGTTT CGTCGAGACG GTGGAGCGGA TGTATGCGGA CGGGGCGCGG
GTCTTCGTCG AATGCGGGCC GCGCAACAAC CTGTCGGCCT TCGTGAACGA CATCCTGCGC
GGGCGCGATC ATGTGGCGGT GGCGGTGGAC ACGCCGTCCT TGCAGGGGCT CGACCAGCTG
CACCACATGG CCGCCCAGCT GGTGGTGGAG GGGGTGACGC TCGACCTCGG CGCGCTGGCG
GCCCCGGTGC GGGCGGTGGC GAAGCCGGCC GGTCCGAGCC GTCCGCAGGT GCTCAAGATG
GGGGTGCAGC CCATGGATAT CGCGTCGGTT CCCAAGCGGG CGCAGAGCGC GCCGTCCAAG
GCACCGCCCG CGCCGAAACC CGCCCCCGCG GCACCGCCCC CCGCCGCGTC GCAAACCCGT
CCCACCGCCA ACTCGCCCGC CGCCCCGACA CCGCCGAAGA TGCCGGTGAC GGTCGCCGCG
GCACCCCGGC CGCAGCCCGC GCCCGCCGCG CCCCCGGCAG AGGCCGAAGC GGTGGTCGAC
GCCTATTTCG ACACGCTGGA GGGCTTCCTC GCCTCCGAGA CCGAGATCAT GGCCGCCTAT
CTCGGCACGG TGCCGGGACA GGCGGACGCG GCCCCCACGC CCATGCCCAC TCCACAGACC
CAAGCGCCCC GGCGGTTCCC GATGCTCGGG GCGGTGACCC CGGCCCCCGA CGGTCGCAGC
CTGACCGCCC GGATCGAGAT CGACCCGGCC CGCGCGCCCT ACCTGCGCGA TCACAGCTTC
GGCCACGGCA TTTCCCAGCG CGACCCGGAG CTGACCGGCC TGCCGGTGGT GCCGCTGACC
TTCTCGATGG AGGCGCTGGC CGAGGCCGCC GCGGCCCTGC GCCCGGACCT GGTGGTGACG
GGGATGCGGG AGGTGCGCGC CTCGCGCTGG TTCGCCCTGG ATCGCCCGCC CCTGGTGGTG
GAGGCTGCGG CGGAACTGCG CGAAGAGGGG CCCGTGACCG TGGTGCGCGT GCGGATCCGC
GCCGCCGATG GCCCGGCGCT GCGCCCGACC CTGATCGAGG CGGATGTGAC CCTGGCCCAA
GCGCGCCCGG AGGCGCCCCT GGCCCAGCCC CAGAGCTATG GCGCCCTGCG CGACGCGCCC
TGGTCGCTTG CGGATGTCTA CGGCAAGATC ATGTTCCACG GTCCCAAGCT GCAGGCGGTG
GAGGCCATGG ATGTGGTCGG CGCAGGCGGG GTGGAAGGCA CCCTGATCGG GCTGCCCCAT
GACGCGCTCT ATGCCGGGGT CGCCGACCCG GGCTTCGAGA CCGACGCGAT CACCCTTGAC
GCGGTGGGCC AGCTGGTCGG CGTCTGGTCG GCGGAAATGC TGCCCGAGGC GTTCCACATC
TTCCCCTTCC GGGTCGAGGC GCTGGAGATC TTCCGCGACC GCCTCGCCCC CGGCGAGCGC
GCGCGCTGCC GCGCGACCAT CGATCTGGTG GGCGCGGACG AGATGCGCGC CGATATCGAC
GTGGTCTCGG CCGACGGGCG GCTGCAATGC CGGATCGCGG GCTGGTGGGA CAAGCGGTTC
AACCTGCCCG AGCGGTTCTT CCGGGCCCGG CTCGACCCGC CGCGCAATCC GCTCTCGGCG
CCCATCGTGC TGCCGGGGGG CGCGCCGTTG CCCGAGGGCT GCGCGCTGCA GCTCTGTGAC
GAGATCGGTG ACGATCTGCT GGACGGCTCC GGTGGGATCT GGGCCAAGGT GCTGGCGGGG
CTTGTCCTGT CCCGGGCCGA GCGGGCGGAA TTCGCCGCCA TGGACGGGGC CACGGACAAG
CGGCGCTGGG AATGGCTGCG CGGGCGCGCG GCGGCCAAGG ATGCGGCCCG CGCGGTGCTG
GGCCGCGCGC TCGCGCCCGC GGACATTCCC CTGGTCGTGC CGGGGGAGGA TGCAGGCCCG
GTGATCGACC CGACCCTGCC GCCCGCCTGG GGGCCTGCGC CGCTTATCTC GATCGCCCAC
AAGGGTGCGC GCGCCCTGGG CCTGGCGGCC GATCCGCGCC GCTATGCCGG GGTGGGCGTG
GATCTCGAAG AGATCGCGCC GCGCACGCCC GCGTTCCTGC AGACCGCCTT CACCCCCGCC
GAGCGCGCCT CGATCATGGC CCTGCCCGAA GGACAGCCGC GCGATACGGC AGCGACCCGC
TATTGGTGCG CAAAGGAAGC AGTCGGCAAA AGCTTCGGGC TCGGCCTCGC CCAGGCCCTT
GATCGTTTCG AGGTTCAGGG TGATGGAACG GACGCCCCGC CCGTGATTGT TCGGGATCTG
TCAACACACA CCGATATTGC GGTGACCGCG ATGGCCGAGC TTGCGCCGGG CCTGATCGCC
GCCGTCGTGC TCAGACCGCA GGACGCAGGA AATTGA
|
|---|
| Protein sequence | MTADGAHTRH ADNEPIAIVG IASIYPEAPD TATYWRNITD KVDAVADAPA DWCADLFFDP
ESADNDRIYT KRGGFLRDLA VFDPLRHGVM PTSIDGGEPD QFLALQVAAD AVEDAGFAAR
PVPGERVAVI LGRGTYINRG FTSVVQHGIM VDRFLSILKK LHPDTDAEEL AEVKAQLKAS
LPPFNAEMAP ALVPNLVTGR ISNRLDFKGA NYIVDAACAS SLIAMDRGVA DLRAGRCDMA
VVGGVHASTP APIYQIFCQL EALSRKGSIK PFSANADGTL LGEGVGLMCI KRLSDAEAAG
DRIYALVRGV GVASDGKGLG ILAPRIEGET LALQRAYEDA GVDPATVGLI EAHGTATALG
DATEVEALVG LMGTRDSDAP SCALGSVKSM IGHCLPASGS AGIIKTALAL YHKTLPPTLL
DEANPELGIE GSPLYLNTET RPWIHGLDTP RRAGVNAFGF GGINAHTVLE EYRGGAEPAP
NLTRSSELLV AGAPDASGLS ARLEALKTAL SGDMPPAEVA RVENAAPCPG PWRAAIVARD
AGDAMAKIDK ILGRIASGKD RLRDRKGAYL NAAPLAATGK VAFMFPGEGS QHLGMLREIM
LHYPRMRQWF DLVDGAFAGH GRNLLPSQVI FPPPGTAEEG GALWRMDIGP EAIFAANQSV
AALYESIGLR PDMLVGHSTG EYSALFAAGV TRREDPAVLQ AEMRALNAEY EAMAAEGLIA
EGALVALGAV DGAALEDKLA GRDDVYLAMD NCPNQKVVAA FSDAGRDYAL SLAPALGGFD
ELLPFSRAYH SPAFAPFSAR LEGFLAGMQV AAPERPVYSC LSTAPFPDSP DAIRKLTADQ
WSGRVRFVET VERMYADGAR VFVECGPRNN LSAFVNDILR GRDHVAVAVD TPSLQGLDQL
HHMAAQLVVE GVTLDLGALA APVRAVAKPA GPSRPQVLKM GVQPMDIASV PKRAQSAPSK
APPAPKPAPA APPPAASQTR PTANSPAAPT PPKMPVTVAA APRPQPAPAA PPAEAEAVVD
AYFDTLEGFL ASETEIMAAY LGTVPGQADA APTPMPTPQT QAPRRFPMLG AVTPAPDGRS
LTARIEIDPA RAPYLRDHSF GHGISQRDPE LTGLPVVPLT FSMEALAEAA AALRPDLVVT
GMREVRASRW FALDRPPLVV EAAAELREEG PVTVVRVRIR AADGPALRPT LIEADVTLAQ
ARPEAPLAQP QSYGALRDAP WSLADVYGKI MFHGPKLQAV EAMDVVGAGG VEGTLIGLPH
DALYAGVADP GFETDAITLD AVGQLVGVWS AEMLPEAFHI FPFRVEALEI FRDRLAPGER
ARCRATIDLV GADEMRADID VVSADGRLQC RIAGWWDKRF NLPERFFRAR LDPPRNPLSA
PIVLPGGAPL PEGCALQLCD EIGDDLLDGS GGIWAKVLAG LVLSRAERAE FAAMDGATDK
RRWEWLRGRA AAKDAARAVL GRALAPADIP LVVPGEDAGP VIDPTLPPAW GPAPLISIAH
KGARALGLAA DPRRYAGVGV DLEEIAPRTP AFLQTAFTPA ERASIMALPE GQPRDTAATR
YWCAKEAVGK SFGLGLAQAL DRFEVQGDGT DAPPVIVRDL STHTDIAVTA MAELAPGLIA
AVVLRPQDAG N
|
|---|
| |