| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1948 |
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| Symbol | |
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| ID | 5712942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2038268 |
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| End bp | 2039287 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267873 |
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| Product | putative basic membrane protein |
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| Protein accession | YP_001533290 |
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| Protein GI | 159044496 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00107991 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000839366 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCACAGC CACCAGCCAG GACCGGCCTC AGCCGCCGCG CCTTCGTCTC CTCCGCCCTT
GCGCTGGGCG CTGCGGGCGT CCTCGTCCGC CCGGCCGCCG CCGCCGACCC GATCAAGGTC
GCGGGCGTCT ACACCGTCCC GGTGGAGCAG CAATGGGTCA GCCGCATCCA TATCGCCGCT
GAAGCCGCCG CCGCCGCGGG CCAGATCACC TACACCTTCT CCGAAAACGT CGCCAATACC
GACTACCCCC GCGTGATGCG CGAATACGCC GAGAGCGGGA TCGAGCTGAT GATCGGCGAG
GTCTTCGCGG TCGAGGCCGA GGCCCGCGAG GTCGCCGCCG ACTACCCCGA GGTGGCCTTC
CTGATGGGCT CCTCCTTCCT TGAGGACCCG AGCCTGCCCA ATTTCGCCGT GTTCGACAAC
TACATCCAGG ACGCGGCCTA CCTGACCGGC CTGATCGCGG GGGCGATGTC CGAGGCGGGC
AATATCGGCA TGGTCGGCGG CTTCCCGATC CCCGAGGTCA ACCGCCTGAT GCACGCCTTC
ATGGCCGGCG CGCGCGAGAT CAACCCGGAC GTGACCTTCC AGGTCAGCTT CATCGGGTCG
TGGTTCGACC CGCCCAAGGC CAAGGAAACC GCCTTCGCCA TGATCGAGAA CGGCGCCGAC
CTTCTCTATG CCGAACGCTT CGGGGTGTCG GACGCGGCGC AGGAACGGGG CCTTCTGGCC
ATCGGCAACG TGATCGACAC CCAGGCGGAT TATCCCGACA CCGTGGTCGC CTCGGCCCTG
TGGCATTTCG AGCCGACCCT GCAGGCCGCC ATCGCGGCGG TCAACGCGGG CGAATTCGAG
GCGGCGAATT ACGGGGTCTT TTCCTACATG CGCGAAGGCG GCAGCAGCCT CGCGCCGCTG
GGCACCTTCG AGGACAAGGT CCCGGCCGAG ATCAAGACCC TGGTGCAGGA ACGCCAGGAC
GCCATCAAGG CCGGCACCTT CACCGTCGAG ATCAACGACG AAGAGCCGAC CTCCTCCTGA
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| Protein sequence | MSQPPARTGL SRRAFVSSAL ALGAAGVLVR PAAAADPIKV AGVYTVPVEQ QWVSRIHIAA
EAAAAAGQIT YTFSENVANT DYPRVMREYA ESGIELMIGE VFAVEAEARE VAADYPEVAF
LMGSSFLEDP SLPNFAVFDN YIQDAAYLTG LIAGAMSEAG NIGMVGGFPI PEVNRLMHAF
MAGAREINPD VTFQVSFIGS WFDPPKAKET AFAMIENGAD LLYAERFGVS DAAQERGLLA
IGNVIDTQAD YPDTVVASAL WHFEPTLQAA IAAVNAGEFE AANYGVFSYM REGGSSLAPL
GTFEDKVPAE IKTLVQERQD AIKAGTFTVE INDEEPTSS
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