| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1926 |
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| Symbol | priA |
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| ID | 5712920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2012570 |
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| End bp | 2014753 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641267852 |
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| Product | primosome assembly protein PriA |
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| Protein accession | YP_001533269 |
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| Protein GI | 159044475 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
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| TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0448061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000000000544837 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCGGTTTG AGGCGGGCGA TCTTGTGGCG GTTCTGACCA CGCAGCCGCT GGACCGGACG
CTGGACTACA AGGCCCCGGA GGGGGGCTGC GTGCAGGGCG ATTTCGTCGA GGTGCCGCTG
GGCCCGCGCA AGGTCGTCGG CGTGGTCTGG GGGCCGGGGC AGGGCGACTG GGACCCGGCC
AAGCTGCGCC GCGTGCTGCG GGTGCTGGAC ACCCCGCCCA TGCGCGACGA GATGCGCGCG
TTCCTGACCC GGGCGGCGCG CTACACCCTG ACGCCGATGC CGGCGATGCT GCGGCTGGCC
ACGCGCGCGC CGGGGCTGGG CGACGCACCG TCGATGCGCA AGGTGCTGGT GGCGGGCGAG
GGGGAGCCTG CGCGCATGAC CGAGGCGCGG ATGCGGGTGA TGGACGCGCT GGCCGCCTAT
GGCGGTGCGC CGGTCACGCA AGCCGAGCTG GTCGAGGCCG CGGGCGTCAG TGCCTCGGTG
ATCAAGGGGC TGGTGGCCGC CGGTGCGATC CACGAGCAGG ACACACCCCG CGACCTGCCC
TATCCGCCGC TGGACCCCGC GCGGCCCGGC AAGCCGCTGA CCCCCGAGCA GGAGGCCGCG
GCGGGGCATC TTCTCCACGG GATCGAGGCG GAGGCTTACG GCACCACGCT GCTCAAGGGG
GTGACCGGGT CGGGCAAGAC CGAGGTCTAC CTGGAGGCGG TCGCGGCCTG TCTGGCCAAG
GGGCGGCAGG CGTTGGTGCT GCTGCCGGAG ATCGCGCTGA GCGCGGAGTT CCTGACGCGG
GTGGAGGCGC GGTTCGGCGC GCGGCCCGCC GAGTGGCATT CGGGCGTGAC CATGACCGAG
CGGCGGCGCT GCTGGCGGAT GGTGGCCGAG GGCGGCGCGC GGTTCGTGGT GGGCGCGCGT
TCGGCCCTGT TTCTGCCGTT TCAGGATCTG GGCCTGATCG TGGTCGATGA GGAACACGAC
ACCTCCTACA AGCAGGAGGA GGGCGTGCTT TACAACGCCC GCGACATGGC GGTGTTGCGC
GCCTCGCTGG CCTCGGCGCA GGTGGTGCTG GCCTCGGCCA CGCCGAGCCT GGAATCCTGG
GCCAATGCGG AGGCGGGCAA GTACCTGCGC GTCGATCTGG GAGCGCGTTT CGGGGCGGCG
GAGCTGCCCG AGATGGCCGC GATCGACATG CGCGCCGAAG AGGTGCCCTT CGGGCGGTGG
CTGTCGCCCA GCCTGAAACG TGCGGTCACT GCACGGCTGG AGGCGGGGGA GCAATCGCTG
CTGTTCCTGA ACCGGCGCGG CTATGCGCCC GTCACCTTGT GCCGGGCCTG TGGGCACCAG
ATCGGCTGCG AGACCTGCGA CGCGCGCATG GTGGAGCACC GGTTTCAGAA GCGGCTGATG
TGCCACCAGT GCGGCGCGAC CCGTGCCATC CCCGAAGCCT GCCCGTCCTG CGAGGCCGAG
GGCAAGCTGG CGGCGGTCGG CCCGGGTGTG GAGCGGCTCG CCGAGGAAGC GGCGGAGGCG
TTTCCCGACG CCCGGATCGC GGTGCTGTCG TCGGACCTGT TCGGCTCGGC GCGCGCGCTC
AAGGCCCAGA TCGTCGAGAT CGCCGAGGGG GCGGCGGACA TCATCATCGG CACGCAGCTG
GTGGCCAAGG GGCACAATTT CCCGCTGCTG ACGCTGGTCG GGGTGATCGA CGCCGATCTC
GGGCTGCAGG GCTCGGACCT GCGCGCGGCG GAGCGGACAT TCCAGCTGAT GCGGCAGGTG
GCGGGGCGCG CCGGGCGGGC GGAAAAGCGG GGCGAGGCGC TGTTGCAGAC CTACCAGCCG
GACCACCCGG TGATCCGCGC GATCCTGACC GGCGACGAAG AGGCGTTCTG GCGCGCCGAG
GCCGGTGAGC GTCATGCGGC GGGGATGCCG CCCTATGGCC GGATGGCGGG GATCATCCTG
AGTTCCCCTG ACTTGCAGGA GGTGTTCGAC CTGGGCAATG CGCTGGCGCG CAACCACGCG
CCGCTCTCGG CGGTGGGGGC GACGGTCTAC GGCCCCGCAC CGGCGCCCAT CGCGCGCATT
CGCGGCCGGC ACCGGGTGAG GCTGCTGGTG ACGGCCCCAA AAGGGGTGGC GTTGCAGGAT
GCGTTGGCGC GCTGGGTGGG ACAGGTCAAG ACCGGGCCGA ACCTGCGCCT GGCGGTGGAC
ATCGACCCGC AGAGCTTCTT CTGA
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| Protein sequence | MRFEAGDLVA VLTTQPLDRT LDYKAPEGGC VQGDFVEVPL GPRKVVGVVW GPGQGDWDPA
KLRRVLRVLD TPPMRDEMRA FLTRAARYTL TPMPAMLRLA TRAPGLGDAP SMRKVLVAGE
GEPARMTEAR MRVMDALAAY GGAPVTQAEL VEAAGVSASV IKGLVAAGAI HEQDTPRDLP
YPPLDPARPG KPLTPEQEAA AGHLLHGIEA EAYGTTLLKG VTGSGKTEVY LEAVAACLAK
GRQALVLLPE IALSAEFLTR VEARFGARPA EWHSGVTMTE RRRCWRMVAE GGARFVVGAR
SALFLPFQDL GLIVVDEEHD TSYKQEEGVL YNARDMAVLR ASLASAQVVL ASATPSLESW
ANAEAGKYLR VDLGARFGAA ELPEMAAIDM RAEEVPFGRW LSPSLKRAVT ARLEAGEQSL
LFLNRRGYAP VTLCRACGHQ IGCETCDARM VEHRFQKRLM CHQCGATRAI PEACPSCEAE
GKLAAVGPGV ERLAEEAAEA FPDARIAVLS SDLFGSARAL KAQIVEIAEG AADIIIGTQL
VAKGHNFPLL TLVGVIDADL GLQGSDLRAA ERTFQLMRQV AGRAGRAEKR GEALLQTYQP
DHPVIRAILT GDEEAFWRAE AGERHAAGMP PYGRMAGIIL SSPDLQEVFD LGNALARNHA
PLSAVGATVY GPAPAPIARI RGRHRVRLLV TAPKGVALQD ALARWVGQVK TGPNLRLAVD
IDPQSFF
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