| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1924 |
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| Symbol | |
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| ID | 5712918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2009151 |
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| End bp | 2010203 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267850 |
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| Product | putative TRAP transporter solute receptor |
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| Protein accession | YP_001533267 |
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| Protein GI | 159044473 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00617183 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000000000275167 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTATTT TGAAACGTCG CCTCTTCCAG ATCTTCCGCG CCGGTCTCGC CCTGCTGCTC
GGCTCCGGCG CGGTCGCCGC CCAGGAGTTC GAAAAGAACA TCCTCACGGG CGGCCCCACC
GGCACCTATA TCCAGATCGG CCGCGACATC TCCAACCTGG TGGACCAATG CGGACAGACC
CTCAACGTGG TTGAAAGCGC GGGCTCGCTG GAAAATTTCC TCGGCGTGCG GCAGCGGCGC
GCCACCCAGT TCGGCATCGT GCAGAGCGAC GTGCTGGAAT ACCTCAAGAC CTATTCCGCC
AGCGACCAGA ACATCGCGCG CGCCATCGCC GGGGTACGCA TCGCCTTCCC GCTCTACAAC
GAGGAGGTCC ACCTGCTGGC CACGCGGGAC ATCACGACGC CTGCGGACCT CGCAGGCAAG
CGCGTGGCCA TCGGGGTTCG GGACAGCGGC ACCTTCCTGA CCGCGTCGCT CTTTCTCGAC
CTTCTCGAAG TTGACGCCGG AGAACTGCTG ACCATCGGGC CGGACGCGGC CATGGCGCAA
CTCCTCGCGG GCGAGATCGA CGCGTTCTTC TACGTCGCGG GGGCCCCAAC GCGGCTGTTC
TCGGAAACCG AGATCGATGC CAACCGGTTC CACCTCGTGC CGGTCGATGA CCCCTTGCTG
GAGGCGGTCT ACCTGCCTTC CGAAATCCCC GCCGGAACCT ATGCCTTCCA GGCCGAGCCG
GTGCCCGTGG TCGCGGTCAA GGCGGTGCTG ATGACTTACG AATACATCCC GCAGCGCAAC
GCCTATCACC GGGCGAGTTG CACCGCGGTG TCGGATGTCT CCAACCTCAT CCTGAACGGG
TTCGCCGAGT TGCAGGCCAG CGGCCATCCG AAATGGCAGC AGGTGGATCT CAACGACATC
CCCCCCGGAT GGGATGTCTC CTCCTGCGTC AATGACGGTC TGGTGGCGAC ATACCAGCCC
AACTGCACCC GGGCGCGCCC CGCCATGACC TCACCCGAAA GCGCGGCCAA CGAAGCTTAC
CGGAACCGGA TCTGCGCGGT CATCGGCTGC TGA
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| Protein sequence | MSILKRRLFQ IFRAGLALLL GSGAVAAQEF EKNILTGGPT GTYIQIGRDI SNLVDQCGQT
LNVVESAGSL ENFLGVRQRR ATQFGIVQSD VLEYLKTYSA SDQNIARAIA GVRIAFPLYN
EEVHLLATRD ITTPADLAGK RVAIGVRDSG TFLTASLFLD LLEVDAGELL TIGPDAAMAQ
LLAGEIDAFF YVAGAPTRLF SETEIDANRF HLVPVDDPLL EAVYLPSEIP AGTYAFQAEP
VPVVAVKAVL MTYEYIPQRN AYHRASCTAV SDVSNLILNG FAELQASGHP KWQQVDLNDI
PPGWDVSSCV NDGLVATYQP NCTRARPAMT SPESAANEAY RNRICAVIGC
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