Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1895 |
Symbol | |
ID | 5712888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1973861 |
End bp | 1976413 |
Gene Length | 2553 bp |
Protein Length | 850 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641267820 |
Product | hypothetical protein |
Protein accession | YP_001533238 |
Protein GI | 159044444 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0996991 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGAAC AAACAGTCAC CGACCGCACC CAGATCCTCG GCAGCGGCCA GGCGGACAAG ATCGTCGCAA CTTCCGGAGC CGACCTGGTG CTGGGACTTG CCGGCGACGA CGTGATCGAG ACCGGGGGAG GGCGGGACCT GATCTATGGC GATTTCGTCG GTGAGAACCT GCTCGACGGC ACCGACACCG CCACCAGTTT TGCCCAGTAT GGCGAGACCG GCGCCTGGAC CGTGCGCGAC GAGGGGGCGG GGCATACCAG CATGTCCCAG TCCATCGACA CACGCGCCGG GGCCACCTAC GAGATCAGCT TCGAGCTGGC CACGAATTAT GACGCCAATG TCCTGAGCGG CGCGGTGGAG GTGCTCTGGA ATGGCGAGGT CATCTCGGCC TTCGATACCA ACAGCGCGGT CTTCGCCGAC CACGTGGTGG GGTTCCAGGG CAATGGCGGT CCGGGGGAGC TGACCTTCCG CTCGGTTGCG CCCCAAAGCA GCGAGGGCCC CGAGATCTTC ACCGACCTGC CGGTGTTCTA CAGGAAAACC GAGAAACAGA TCGGCGAAAC GCTGGTCACG GTCAAATCCA TCGCCGAGGG CCAGTCGCAT ATCTACCAGG TGCTGAACGG CAAGCTGCAC CTTTTCGACC CGGTTTCGGA AAGCTACACG CCCGCGGGCG CCGAGGCGAC GGTAGTCGTC AATGCCATCG GTTTCAACCA GCAGGACAAC CTGATCTACG GCATTGCCGT GAAGCCGGGC GAGGATGCCT TGGGCAACGC GGTCGCCGAG GCGGATCTCG TGATGTATGA CGCCGGTGGC GATGCCTACC GGATCGGCGC GACCCCCTAT CGCAGCTGGA CCGCCGATAT CGACGCCGAT GGCAACCTTT GGGCGTTTCA TTCCAGCATG GACCGGGTCA CCCGGATCGA CCTCGATCAG GTCGATGCCG ACGGCAACCC GGTCACCGAA ACCTTCAAGT TCCCCAAGGA GATGATCACC GATCAGGTCT GGGATGTGGG CTTCGACGCG GCCAGCAACA CGTTCTACGG CATCGTCAAG CCAAGCGCGG CGGGCCAGCC CGCCAAGCTC TTCGAGATCG ATATCTCCGA GGTCGCAAGC GGCGGCGCGC CGATCTTCTC CACGACCCCG ATCGTCGAGA CCGAAGTGGC GGGCCAGATG CTGGAGGGCG TGCCCGCGAT CACCTTCGGG GCGTTCGTGG TCGATGGTGA CGGAAATCTC TATGCGGGGG GAAATGGCGG CGATCACGAC ATGAACAGCG CCACCAAGTC GTCGGGCGGC ATCTACAAGG TGCGCACCGA TACCGAGACC GGCGAGATCA CGCTGGAACT GGTCTCCGAC GCGCCCAAGG CCAACTCCAA TGACGGCGCG GTGGACCCGC GCACCATGGA CCCGTTTACC GCCAAGGACA GGTCGGCCAC CGTGCTGATC CGCTCTCCCG AGGTGGTCGC GGCCCCCGAT GACAGCACCA GCTACGACGA TAAGATCCAT TCCGGCGCGG ATGCCGATAC CGTTCACGGC GGGCTTGGCG AAGACCTGAT CATCGGTGCC GGACGTGGCG ACACCCTGAG CGGTGGGGCC GATAACGACG CGATCTATGG CGGCGCAGGG CCGAACAGCA CCGCCACCAT GGTGTCGCGT TATGACGCGG ATGGCACGCG CTATGACCCG TTCGGCAATG TCCTGCCCGA AGATGACGAT CGGCTTTTTG GCGGCGAGGG CGACGACTAT CTCAGCGGCT CCGCCGGACA TGACAGCCTT CACGGTGGGG TCGGCAATGA CACGCTCGAC GGTGGCACCG GGTTCGACAC GCTGTTCGGC GATTCAGGGG ATGACATCCT GTCCGGTGGC AGCGACCAGG ACACCCTGCA CGGGGGCGCG GGTGCCGACG CGCTCAATGG CGGTTCCGGG CATGACGTGC TGCATGGCGA TGACGGCGCC GACAACCTGA TCGGCGGCAG TGGCGATGAC ACGCTCCATG GCGGGGCAGG TGCGGACGAC CTGCGCGGCG GGCCTGGCGC CGATATCCTG CACGGTGATG GCGGCGACGA CCGTCTCGAT GGCGGCACCG AGGACGACCG CCTCTACGGC GGGGCGGGGG ATGATTATGT CAAGGGCGCC GCGGGCGACG ACCTGCTCTC GGGCGGCGAC GGCAAGGACA AGCTGATGGG CTATTCCGGC GCGGATGTGC TCGATGGCGG GGCAGGGGCC GACCGGCTCT ATCTCGGCGC CGGGGCGGAT ATCGCCACGG GTGGCACAGG CAGCGACCGG TTCATCTTCC GCGCCGACGA TCTCGACGGC AGCACGGACC GGATCACGGA TTTCCGCAAT GCGGGAGGTG AGAAGGACCG GCTGGACCTG CGCGGACTGG ATTTGCTCTC GGATGACATG ACCGCGGATC TGTGGATCGC CACCTACGTG ACCCAGGGCG CGGACCGGAG CGTGACGGTC GACCTCGGCG CCTGCACGAT CAGTTTCGAG GCCCGGTCGG ACGGCCCGGC GCAGGCGCTC TACCTGGAGC TTTGCGACGG CATCCTGTTC TGA
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Protein sequence | MPEQTVTDRT QILGSGQADK IVATSGADLV LGLAGDDVIE TGGGRDLIYG DFVGENLLDG TDTATSFAQY GETGAWTVRD EGAGHTSMSQ SIDTRAGATY EISFELATNY DANVLSGAVE VLWNGEVISA FDTNSAVFAD HVVGFQGNGG PGELTFRSVA PQSSEGPEIF TDLPVFYRKT EKQIGETLVT VKSIAEGQSH IYQVLNGKLH LFDPVSESYT PAGAEATVVV NAIGFNQQDN LIYGIAVKPG EDALGNAVAE ADLVMYDAGG DAYRIGATPY RSWTADIDAD GNLWAFHSSM DRVTRIDLDQ VDADGNPVTE TFKFPKEMIT DQVWDVGFDA ASNTFYGIVK PSAAGQPAKL FEIDISEVAS GGAPIFSTTP IVETEVAGQM LEGVPAITFG AFVVDGDGNL YAGGNGGDHD MNSATKSSGG IYKVRTDTET GEITLELVSD APKANSNDGA VDPRTMDPFT AKDRSATVLI RSPEVVAAPD DSTSYDDKIH SGADADTVHG GLGEDLIIGA GRGDTLSGGA DNDAIYGGAG PNSTATMVSR YDADGTRYDP FGNVLPEDDD RLFGGEGDDY LSGSAGHDSL HGGVGNDTLD GGTGFDTLFG DSGDDILSGG SDQDTLHGGA GADALNGGSG HDVLHGDDGA DNLIGGSGDD TLHGGAGADD LRGGPGADIL HGDGGDDRLD GGTEDDRLYG GAGDDYVKGA AGDDLLSGGD GKDKLMGYSG ADVLDGGAGA DRLYLGAGAD IATGGTGSDR FIFRADDLDG STDRITDFRN AGGEKDRLDL RGLDLLSDDM TADLWIATYV TQGADRSVTV DLGACTISFE ARSDGPAQAL YLELCDGILF
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