| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1893 |
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| Symbol | |
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| ID | 5712886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1970454 |
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| End bp | 1973216 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267818 |
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| Product | LOV-regulator, Blue-light sensing |
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| Protein accession | YP_001533236 |
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| Protein GI | 159044442 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.423791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.136547 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAAG ATGAGCGGCT GCGCGAGGCA CTGCTCGAAT TGCAGCTTCT GCGCGCGCGG
GAGGCCAAAT CGCTCAGCGC GACGCGGATG CTGCTGGAAT GCCTGGAGGC CTATTCCAGC
GCGCGCACCC CGGCTGACGC CCTCAACAGC ATTTTCGTCT CCCTGCGCGA CAGGATCGGC
GCGGAATTCA CCGCCCTGGG CGAGATCGCG CAGGACGGCG CACTGGTGAT CGCGGCCAGC
GACGATCCCG CCTGCCTCGG CCTGCGTCTC GCGCCGCCCT TCGATCTCGC CGCGCGGCCC
CGGGACATCA TGGACCTGGC GCTGCTGGGG GCGTGGTACG GCCCCTGGGA CATCGCCCGT
TACAGCGCCC TGCAATGCGC GCCCCTGCAG ACCGATGGCC GCCGCCATGC CCTGTTGGCC
TTCCGCAGCG GCCCGCAGCC CTTCCCCAAG GGTAGCCTGC AGCTGGTCGA ACGGCTGGCC
GGGCTGGCCC TGCGCGCGCT GCAGGGCAGC GAGATCGCCA CGGAAAACAA GCTTCTGGCG
GCGGCGATCC AGGGCTCTTC CTCGGGCTTC GCGATTGCGG ACGCCACCGA CACCGCGCGC
CCGTTGATCT ACGTCAACAG CGCCTTCGAG CGTTTGTCGG GCTATGCCGC CGAAGAGGTG
CTCGGCCAGA ACTGCCGGTT CCTGTCGGCC GAACCGCCGG ACAGCGCCGA GCGCGAGCGG
CTGCGTGCAG CGGTGCAGGC GAACGGGTCG GGCCAGTTCC TGCTGCGCAA CCGGCGCAAG
TCCGGGGATC TGTTCTGGAA CGAGCTGACC CTGTTTCCGG TGGAAAACGA GGCCGGGGAG
GTCGTCAATC TCGTGGCCAC CCAGACCGAC GTGAGCGCGC GGGTCGAGGC CGCCGCCGAA
CGGGACCGCA CACGGGCGCA GATGGCCCGG GCCCTGACGG CGACGGAGGA TGCATTCCTC
GTGCTGGAGC CCGGCAATGT CGTGGTCTTC GCCAACAAGG CCACGCGGGA GATCTTCTGC
GCCCCGGACG TGGACTGGGC GGTCGGCTCC ACCTTCGATG CGAACTGGGC GGCGTATCTC
GCGGCGTGCG AAGACCTGCC CGGGCGCGTC ACGAGCCTAC TGGAAACGCC GGACCTCGCC
ACGCTGGCGC AATTGCCCAA GGGACGGGAG ATCGACCTGC CCGACGGGCA CACGATCCTG
ATCCGGGCCT CGGCCTTCGC CGATGGTGGG CTGGTCCTTT CGGCGACCGA TGTCACACCG
ATGAAGATGG CTCAGCGGCT GTTGTCCCAA CGCCTTGCAG CGATTGAGGC CGCGCGGGAC
GGAATAGCGG TCACCGATGG CGACGGTCGG CTGACCTTCC TGAACCGTGC GGCCTCGCAG
CTGCTGGGGT TCCCATCGCC CGCACGAGCC CTTGGGCGCC CGTGGCACGA TCGCTATGAC
GGACCTTCGC GATCTGCCAA CCAGGAGCCG TTCGACATGA CCCTGGAGCG GACCGAGGAC
GGTGTCACCC GGACGCACGA AGTGACCGGC ACCGTGCTGG ACAGCGGCGG AACGGTGATC
GTGTTCCGCG ACATCACCGA CCGGCTGGAG TATGAGACCC GCGAGGCGGA GCTCAAACAG
GGGCTGCGCC AGTTGCAACG GCAAGAAGCG ACCGCGCAGT TGACCGCGGG GATTGCCCAT
GATTTCAACA ACCTGTTGTC GGCGATCAAC GGCTCGGCCA CCCTGATCGG CCTCGAAGAG
AATCTGACGG ACACGCTCAA GGCCCATGTC AACCGGATCT CGACCGCCGG GACACAGGCG
GCACGGCTGG TCAACCGGCT GCTGGACATC GGCGCGCGTC ACGAGGCGGT CGGCAGCTTC
AACCTGCGTG CTGCGATCGC GGACATCCCG GCGCTGGTGG AACCCAGCCT CCCCGACAGC
ATCGCGCTGC GCATGGATGC GTCCGAGGGT GGGCTGACCC TGTCGGGTGA TCCGGGCTCG
TTGTCCCAGG CCATCGTGAA CCTGGTGCTC AATGCCCGCG ATGCCATCGG GAACCGGGCG
GGCCGAATCG ACCTGCGGAT CTCGGCGGTG ACCGGTCAGT GCGGTGCAGA GATCCAGGTG
GGCGAGCTGC GCCCCCAGGC CCGGTACGCG CGCATCGACG TGTCCGACAC CGGCGCGGGG
ATCGCGGCGG ATCAGCTGGT CGCGGTGTTC GAGCCCTATT TTTCGACCAA GGGGCGGCAC
GGCACCGGGC TGGGCCTGGC GATGGTGTCC CTGCAGGCCC AGGCGGTCGG CGGGGCGGTG
GGCATCGCGT CTGCCCCCGG GTCTGGCACG ACCGTCTCGG TATTCTGGCC CGTCACCTCG
CCTGAGGATA TCGCCGGATC AGGTCCGACC GGGGCGGGTC ATGACCTGAC CGGACAGACG
ATCATCCTGC TCGATGACGA TCCGGAGGTC GCGGCCGTCG CCGCCGCGTT CCTGGAGGCG
CGGGGCGCGG AGGTCGCCGT CTGCATCGAT CCGCGCGACG CGGTGGAGGC AGTAGAGGAC
GCCCCCGAGG CCTGGTCCGC GGTGGTCACC GATTACGACA TGCCGCATCT GACCGGCGGC
GATGTGGCCG AGCGGATCAA GCGCCTGAAC CCGGCCCTGC CGGTGGTGCT GGTGACCGCG
CTGGCCCGTC GCCTGTCGGA CCCGCGCATC GCCGATGGCA CGATCGATGC GGTCTTGCCG
AAACCGGCGG ACCTTGACCA TTTGTCCTCA ATTCTGTCCC AGTATCATCA CCGCTCCAAC
TGA
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| Protein sequence | MAEDERLREA LLELQLLRAR EAKSLSATRM LLECLEAYSS ARTPADALNS IFVSLRDRIG
AEFTALGEIA QDGALVIAAS DDPACLGLRL APPFDLAARP RDIMDLALLG AWYGPWDIAR
YSALQCAPLQ TDGRRHALLA FRSGPQPFPK GSLQLVERLA GLALRALQGS EIATENKLLA
AAIQGSSSGF AIADATDTAR PLIYVNSAFE RLSGYAAEEV LGQNCRFLSA EPPDSAERER
LRAAVQANGS GQFLLRNRRK SGDLFWNELT LFPVENEAGE VVNLVATQTD VSARVEAAAE
RDRTRAQMAR ALTATEDAFL VLEPGNVVVF ANKATREIFC APDVDWAVGS TFDANWAAYL
AACEDLPGRV TSLLETPDLA TLAQLPKGRE IDLPDGHTIL IRASAFADGG LVLSATDVTP
MKMAQRLLSQ RLAAIEAARD GIAVTDGDGR LTFLNRAASQ LLGFPSPARA LGRPWHDRYD
GPSRSANQEP FDMTLERTED GVTRTHEVTG TVLDSGGTVI VFRDITDRLE YETREAELKQ
GLRQLQRQEA TAQLTAGIAH DFNNLLSAIN GSATLIGLEE NLTDTLKAHV NRISTAGTQA
ARLVNRLLDI GARHEAVGSF NLRAAIADIP ALVEPSLPDS IALRMDASEG GLTLSGDPGS
LSQAIVNLVL NARDAIGNRA GRIDLRISAV TGQCGAEIQV GELRPQARYA RIDVSDTGAG
IAADQLVAVF EPYFSTKGRH GTGLGLAMVS LQAQAVGGAV GIASAPGSGT TVSVFWPVTS
PEDIAGSGPT GAGHDLTGQT IILLDDDPEV AAVAAAFLEA RGAEVAVCID PRDAVEAVED
APEAWSAVVT DYDMPHLTGG DVAERIKRLN PALPVVLVTA LARRLSDPRI ADGTIDAVLP
KPADLDHLSS ILSQYHHRSN
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