| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1808 |
|---|
| Symbol | |
|---|
| ID | 5712796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1881663 |
|---|
| End bp | 1883201 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641267728 |
|---|
| Product | putative sodium:alanine symporter family protein |
|---|
| Protein accession | YP_001533151 |
|---|
| Protein GI | 159044357 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1115] Na+/alanine symporter |
|---|
| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.921517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.308528 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCC CGATCTCTGC CGCGCTCGCC CTCGCGCTGA GCGCGACGGC CTTGCGTGCC
CAGGAGGCCC GCACCATCGA CCAGGCCGTC AACGAAACCT TCGCCGCCGT GACCGGGCCC
TTCGTCGGCC TGATCTTCGC GCCCCTGCCG GGGACGTCCT TTCCGTGGAT CGTGCTGTGG
CTGGTGGTCG CCGCCAGTAT CTTCACGGTC TATTTCGGTT TCATCCAGCT GCGCGGCTTC
GTGCACTCGA TCAAGCTGGT CAAGGGCGAC TATGCCGACC CGGATGACGC CGGCGAGGTC
AGCCATTTCC AGGCGCTGGC CACCGCGCTC TCGGGCACCG TGGGGCTCGG CAACATCGCC
GGGGTCGCGG TCGCCGTGGG CATCGGCGGG CCCGGCGCGA CCTTCTGGAT GATCTTCGCA
GGTCTTCTGG GCATGGCATC GAAATTCACC GAATGCACGC TCGGCGTGAA ATACCGAAAC
GAGTACCCGG ACGGCACCGT CTCGGGCGGC CCGATGTACT ACATCTCCAA GGGTTTCGCC
GAGAAGGGCA TGCCCGGCGG CAAGTTCATG GCGGTGCTGT TCTCGATCTT CTGTATCCTC
GGGGCGCTGG GGGGCGGGAA CATGTTCCAG GCCAACCAGG CCCATGCGCA GATCTCGGGC
ATCGTCGGGG ACTATCCCGG CTGGATCACG GGCATCATCT TCGCGGCGGT CGTCTTCGCG
GTGATCGTGG GCGGGATCAA ATCCATCGCC AAGGTCACCG AGAAGGTCGT GCCCTTCATG
GGCATCCTCT ATGTCGCAGC GGCGCTGGTC ATCCTGCTGG TCAATATCGA CCAGATCGGC
TGGGCCTTCG GGCAGATCTT CGAAGGGGCC TTCACTGGGC TCGGCGTGGC GGGCGGTTTC
GTCGGCGCGC TGATCCAGGG CTTCAAGCGG GCTGCGTTCT CCAACGAGGC GGGCGTCGGC
TCGGCGGCCA TCGCCCACTC GGCGGTCAAG ACCAAGGAGC CGGTGACCGA AGGCTATGTC
TCGCTGCTCG AGCCGTTCAT CGACACGGTG GTGATCTGCA CCATGACCGC GCTGGTGATC
ACCATCTCGG GCCAGCTGAT GATCAACCCC GATACCGGCC TCTACATGGT CGAGAACGGC
GCGATCATGA CCGTGGACGG CAATTCCGGC GTGGCGCTGA CCTCGGCGGC CTTCGCGACC
GGGTTCTCCT GGTTTCCCTA CGTGCTCGCC ATCGCGGTGG TGCTCTTCGC CTTCTCGACC
ATGATCTCCT GGTCCTATTA CGGGCTGAAG GCCTGGACCT ACCTCTTCGG GGAGGGCAGG
ACCAAGGAGC TGGTCTTCAA GGTCATCTTC TGCGTCTTCG TGGTGATCGG CGCGGCCGCC
AGCCTCGGCC CGGTGATCGA CTTCTCCGAC GCGGCGATCT TCGCCATGGC GGTGGTCAAC
ATCGCGGCCC TCTACGTGCT GATGCCCGTG GTCAAGGCGG AGCTTGCCTC CTACCGCGCA
AGGCTGGACT CCGGCGAGAT CCGCGAGTTC AAGGAATAA
|
|---|
| Protein sequence | MKTPISAALA LALSATALRA QEARTIDQAV NETFAAVTGP FVGLIFAPLP GTSFPWIVLW
LVVAASIFTV YFGFIQLRGF VHSIKLVKGD YADPDDAGEV SHFQALATAL SGTVGLGNIA
GVAVAVGIGG PGATFWMIFA GLLGMASKFT ECTLGVKYRN EYPDGTVSGG PMYYISKGFA
EKGMPGGKFM AVLFSIFCIL GALGGGNMFQ ANQAHAQISG IVGDYPGWIT GIIFAAVVFA
VIVGGIKSIA KVTEKVVPFM GILYVAAALV ILLVNIDQIG WAFGQIFEGA FTGLGVAGGF
VGALIQGFKR AAFSNEAGVG SAAIAHSAVK TKEPVTEGYV SLLEPFIDTV VICTMTALVI
TISGQLMINP DTGLYMVENG AIMTVDGNSG VALTSAAFAT GFSWFPYVLA IAVVLFAFST
MISWSYYGLK AWTYLFGEGR TKELVFKVIF CVFVVIGAAA SLGPVIDFSD AAIFAMAVVN
IAALYVLMPV VKAELASYRA RLDSGEIREF KE
|
|---|
| |