| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1738 |
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| Symbol | tktA |
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| ID | 5713305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1803674 |
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| End bp | 1805647 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267656 |
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| Product | transketolase |
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| Protein accession | YP_001533081 |
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| Protein GI | 159044287 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.516537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.588017 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCAA CGGCGATCCG GACCCTTGCC CTCGATGCGG TGGCCGCCGC GAATTCCGGG
CATTCCGGCA TGCCGATCGG CATGGCGGAT GTGGCCACGG TCCTGTTCGA AAAGCACCTG
AAATTCGATG CGAGCGCTCC GGACTGGGCC GACCGCGACC GGTTCATCCT GTCGGCGGGC
CATGGGTCGA TGCTGCTCTA TGCGCTGCTG CACCTGACGG GGTACGAGTC CATGCCCCTG
TCGGAGATCA AGAATTTCCG TCAGCTCGGT GCCGCCACCG CGGGTCATCC CGAGTTTGGC
CATGCCGCGG GCATCGAGAC GACGACCGGT CCGCTGGGCC AGGGCATCGC CACCGCCGTG
GGCTTTGCCA TGGCCGAAGA GATCCTGCGC GCCCGCTGGG GTGCCAAGAT CATGGATCAC
CACACCTGGG TGATCGCGGG CGATGGCTGC CTGATGGAAG GCATCAGCCA GGAGGCGCTG
ACGCTCGCCG GGCGGCAGGA GTTGAGCCGC CTGATCGTGC TGTGGGATGA CAACGGCATC
ACCATCGACG GCAAGGTCGA CCTGTCGGAC CGCACGGACC AGATGGCGCG GTTCGCGGCC
TCGGGCTGGG ACGTCTTTTC CTGCGACGGG CATGACCCCG AGGATATCGA CCGCGCGCTG
AGTGCCGCGA AGGCGTCCGA CAAGCCCGCC ATGGTGGCCT GCAAGACCCA TATCGCGCTT
GGTCACGCGG CCCAGGATAC CTCCAAGGGC CACGGGGCGC TGACGGATGA CAGCCAGAAT
CAGGCCGCGC GCGAGGCCTG GGGCTGGACC CATGGGCCGT TCGAGATCCC GGCCGAGATC
AAGTCCCAGT GGGAGGCGAT CGGCGCCCGC GGGGCCGCCG AGAAGGCGGC CTGGGACGCC
CGGTTCGCCA AACTGTCCAA TGCCAAGCAG GTCGAGTTTT CCCGCGCGTT CGCGCGCCAG
TTGCCCAGGA AGCTGAGCGC CACGATCAAG GCGCTGAAAA AGCAGACCTC CGAGACCGCG
CCAAAGGTGG CGACCCGCAA GGCGTCGGAG ATGGCGCTCG AAGTGATCAA CCCGATCATG
CCCGAGACCG TGGGCGGCTC GGCGGACCTC ACGGGGTCGA ACAACACCAA GACTGGCGAT
CTGGGTGTCT TCATGCCCGA GAGCCGCGAC GGGCGGTATG TCTATTACGG CATCCGCGAG
CATGGCATGG CCGCGGCGAT GAACGGCATG AGCCTGCATG GCGGCATCCG TCCCTATGGC
GGCACGTTCC TGTGCTTCAC CGATTACGCG CGCGGGGCGA TGCGCTTGTC GGCGCTGATG
AAACAGCCGG TGGTTTATGT GATGACCCAC GATTCCATCG GGCTGGGCGA GGATGGCCCG
ACCCATCAGC CGGTCGAACA CCTGGCGATG CTGCGCGCCA CACCCAACAC CCTGGTGATC
CGCCCCGCCG ACGCGGTCGA GACCGCCGAG GCCTGGGAGA TCGCGCTGGA GCAGACCGAA
ACGCCCACGG TGCTGGCGCT GTCGCGCCAA GGCCTGCCCA CCCTGCGGAC CGAGCACAAG
ACCAAGAACC TGACCGCCCA GGGCGGCTAC GTTCTGGCCG AGGCCGAGGG CAAGCGCCAG
GCGATCCTGA TGGCCACCGG GTCCGAGGTG GCCATCGCCA TGGCCGCGCG CGACCTGTTG
CAGGCCGAGG GGATCGGCAC GCGCGTCGTG TCCATGCCCT GCTGGGAGAT CTTCGAAGAA
CAACCCGACG CCTATCGCCG CAAGGTGCTG CCCGCCGGGC CCGTCCGCGT GGCGGTGGAG
GCCGCGATCC GCTTCGGCTG GGACCGCTGG CTCTATGGCG AGCGCGGCAA GCGCGAAAAG
GGCGGCTTCG TCGGCATGCA TGATTTCGGC GGATCGGCCC CGGCGGGCGA TCTTTACAAG
CATTTCGAGA TCACGCCCGA GGCGGTCGCC GCCAAGGTCA AGGAAATGCT TTGA
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| Protein sequence | MKATAIRTLA LDAVAAANSG HSGMPIGMAD VATVLFEKHL KFDASAPDWA DRDRFILSAG
HGSMLLYALL HLTGYESMPL SEIKNFRQLG AATAGHPEFG HAAGIETTTG PLGQGIATAV
GFAMAEEILR ARWGAKIMDH HTWVIAGDGC LMEGISQEAL TLAGRQELSR LIVLWDDNGI
TIDGKVDLSD RTDQMARFAA SGWDVFSCDG HDPEDIDRAL SAAKASDKPA MVACKTHIAL
GHAAQDTSKG HGALTDDSQN QAAREAWGWT HGPFEIPAEI KSQWEAIGAR GAAEKAAWDA
RFAKLSNAKQ VEFSRAFARQ LPRKLSATIK ALKKQTSETA PKVATRKASE MALEVINPIM
PETVGGSADL TGSNNTKTGD LGVFMPESRD GRYVYYGIRE HGMAAAMNGM SLHGGIRPYG
GTFLCFTDYA RGAMRLSALM KQPVVYVMTH DSIGLGEDGP THQPVEHLAM LRATPNTLVI
RPADAVETAE AWEIALEQTE TPTVLALSRQ GLPTLRTEHK TKNLTAQGGY VLAEAEGKRQ
AILMATGSEV AIAMAARDLL QAEGIGTRVV SMPCWEIFEE QPDAYRRKVL PAGPVRVAVE
AAIRFGWDRW LYGERGKREK GGFVGMHDFG GSAPAGDLYK HFEITPEAVA AKVKEML
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