| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1660 |
|---|
| Symbol | |
|---|
| ID | 5713225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1725859 |
|---|
| End bp | 1726311 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641267576 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001533003 |
|---|
| Protein GI | 159044209 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00278304 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTTA CGACCCGAAC CAACCTCGCC ATGCGGACGC TCATGTATTG TGCGGTGCAT
ACCGGGCGGA ACATCCGGAC TTCGGAGGTC GCAAAGGCGA CCAACGCGTC GGAAAACCAT
CTCGGACAAG TCATCAACAT GCTGGGCCAG ACCGGTTTCA TCGAAACCGT ACGTGGACGC
GGGGGCGGCA TTCGACTGGC CCGCAACGCG CAGGACATCA CCGTGGGCGG TGTTTTCCGG
GTGTTCGAAG CCGGAACGCC CTTTGCCGAG TGTTTCGACG CCAAGGAGTG CACTTGTCCG
CTGATTTCGG TTTGTCGGCT GAAAGGGGCC CTTGGCGAAG CCTTGATGGC CTTTTATCGC
TCTCTCGACG CAATCACGCT CGAAAGTCTT GTCAAGGATA ATACCGGGCT CAAGGACCTT
CTGGGTGTGG AGCCGGTCAC AGCGCCAGCC TGA
|
|---|
| Protein sequence | MRLTTRTNLA MRTLMYCAVH TGRNIRTSEV AKATNASENH LGQVINMLGQ TGFIETVRGR
GGGIRLARNA QDITVGGVFR VFEAGTPFAE CFDAKECTCP LISVCRLKGA LGEALMAFYR
SLDAITLESL VKDNTGLKDL LGVEPVTAPA
|
|---|
| |