| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1653 |
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| Symbol | |
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| ID | 5713218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1718787 |
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| End bp | 1719851 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641267569 |
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| Product | HTH-type transcriptional regulator |
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| Protein accession | YP_001532996 |
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| Protein GI | 159044202 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.117705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0000123229 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAGGATCA AGCTGACCCC GCGCGACAAC GGACACATGA ACCTCAAGCA GCTTTCGGAA
AAACTGGGCC TGTCTCCGAC CACGGTGAGC CGGGCGCTGA ACGGCTACCC GGAAGTGTCC
GAAAACACCC GCCGCCGCAT CCAGGAGGCT GCGGAACAGT ACAACTATTT CCCGAGCGCA
CGAGCCCGGT CGCTGGCCAC AGGGCGCGCC ATGGCCATTG GACACGTGCT GCCGATGACC
ATATCCTCGG AGATGGTGAA CCCTGTTTTC GGCGATTTTC TCGCCGGGGC CGCCGAGACC
TACTCCAAGT CCGGGTATGA CATTACCCTG TCGAGCGTGC GCGCTGAGGA TGAGTTGAAA
TGCTACCGCG ATTTCGCGGC CAAACGCATC GTCGACGGGG TGATCGTCCA TGCACCGCGC
ACCGATGATC CCCGCATTGC GCTGCTGAAA GAGTTGGGGT TGCCCTTCGT CGTCCACGGA
CGCGCGCCCA TCGCCGATGA CAGTTATGCT TGGCTCGACA TCAACAATCG GCGCGCCTTT
TATCGTGCCA CGAAGCTGCT GATCGACCTC GGCCATCGGG AAATCGCCCT GATCAACGGC
CAGGAGCAGA TGGATTTTGC ACAACGTCGG CGTGCCGGCT ATAGCGCCGC GATGCACTCT
GCCGAGCTCA CCCTGCGCCC TGAATTGATG GTATCGGAGG AGATGACCGA AGGCGTTGGA
TATGCTGCGG CCAAACGGAT GCTGTCGCTG AAAAAGCCAC CCACGGCGTT TCTCGTCTCC
TCCATCATCA CCGCCATAGG GGTCCGCCGC GCTGTCAGCG ATCTCGGCCT GCGGTTGGGA
CAGGACATCT CGGTGGTCAT CCATGACGAC GAGATCAGCT ATCTGCGCAA CGGCGATACG
GAACCGTTGT TCACTGCGAC CCGCTCTTCG GTGCGCGCGG CGGGACGGCG CGCGGCGGAA
ATCCTGCTGC AGCAGATCGC ACAGCCCGAA GCCGCCCCCG TGCAAGAACT CTGGGAAGTG
GAGCTGTCCC TCGGCCAATC CACCGGACCC GTCCGCCACA GCTAG
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| Protein sequence | MRIKLTPRDN GHMNLKQLSE KLGLSPTTVS RALNGYPEVS ENTRRRIQEA AEQYNYFPSA
RARSLATGRA MAIGHVLPMT ISSEMVNPVF GDFLAGAAET YSKSGYDITL SSVRAEDELK
CYRDFAAKRI VDGVIVHAPR TDDPRIALLK ELGLPFVVHG RAPIADDSYA WLDINNRRAF
YRATKLLIDL GHREIALING QEQMDFAQRR RAGYSAAMHS AELTLRPELM VSEEMTEGVG
YAAAKRMLSL KKPPTAFLVS SIITAIGVRR AVSDLGLRLG QDISVVIHDD EISYLRNGDT
EPLFTATRSS VRAAGRRAAE ILLQQIAQPE AAPVQELWEV ELSLGQSTGP VRHS
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