| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1644 |
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| Symbol | |
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| ID | 5713209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1705935 |
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| End bp | 1708274 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641267560 |
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| Product | histidine kinase |
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| Protein accession | YP_001532987 |
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| Protein GI | 159044193 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000000000228151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAGCGATC AGCCGCTTCA GGGGCAAAGC AGAAGGATCT TTCCGGGCAA GGGCACCCGG
GAGGCTGTCT TGTTGCTCGG GTCGGCCGCT GTCATCTCGG CCGTTGCGAT CCTGCTGCAG
GATCAGACCA TCAGGTTGTC GTTGGCTGTC TCGGCCATAA CCCTCGTGGC CTTGCTGATT
CTCCTGCAAC TGCGCGCGCG CTTCGCCGGC ACGCGCATTG ATCCCAAACT CGTGGCGCTT
TTTCCCTTTC TGGAGGGTGA CTCCGCACCT TCGATTGTCG TTGACCCAGA CCAGCAGGTT
CTCTGGGCAA ACGGGGCGGC CAAGGCGCAG TTTCCGGCGC TTGCAGATGT TGGCATCGTT
GCCTCGGTCG AGAGCGTGAT GCCCGATGCG TCCGGGCTTC TGCGCCGGTT GCGACGTGGC
CTTGAGCGCG GCTCGATGAG TATTGAGGAT GTGGCTGTCC GGCAGGGACA TGCTCGGTTC
GCATTGCGAT CCTATGCCAG CGGTCAAATG CTCTTCCGGA TGGAGGCGCT GGCGACCCGT
GGGGGAAATG GTGGCGGCTC CGGCTCGGTT CCGGTACTGA CCGTCTCGCA AACCGGGACG
GTCCTGTCGA TGAACGATGC TCTAAGGCGC ATGATCGGCA TCCGGGCTCG CGATCTGACT
GCGGTGTTCG TGACCCCACC AACAGACACG GCCTCGACCG CGGAGATCAT CACGCCAGAT
GGACACGTAA CCGTGTACCT GCAGCAGACA TCGCTTTCGG CGGGCCGTCG TGAGATCGCG
ATGATCCCCA TCGAGAACCT CTCCAGTGTT CATGACCTAA AGACGGGTCT CGAAGAGCTT
CCGGTTGCGG TTCTGAAACT CGGTGTGGAC GGTCAGTTGT TGCAGGCCAA TGCATCTGCT
CGATCCCTTC TGAGCATCGA TCATATCGAC CCAGATATGA ATTTTGCCAA TCTTGTCACA
GGGCTGGGGC GATCCGTTCG TTCATGGCTT GAAGATGCAT TGCACGCACA CCACCCCTTG
CAGCCCGAAG TACTGCGCGT TCGCGACCGG ACAGAGGAGA GCTTTTTACA GGTCTCCCTG
ATGCGCTCCC AAAGTGCAGA GGGCCCCGTT CTGACAGCGG TTCTTCATGA TGCGACAGAG
CTGAAGACCT TGGAAGCCCA GTTCGTTCAG AGCCAGAAAA TGCAGGCAAT TGGGCAGCTT
GCAGGTGGTG TCGCGCATGA TTTCAATAAT CTGCTGACCG CAATCTCAGG CCATTGCGAT
CTGTTGCTGC TGCGGCATGA TCAGGGAGAC CCCGAGTACG GAGATCTCGT GCAGATTAAT
CAGAATGCGA ACCGGGCGGC GAGTCTTGTG GGCCAGTTAC TGGCGTTTTC GCGCAAACAA
ACCTTGCAGC CCGAGTTGAT CGACCTGCGC GATACGCTGT CGGACCTGAC CCATTTGCTG
AACCGTCTTG TCGGTGAGCG GGTATCGCTG ACCTTGATGA CTGACCCCGA TCTCAGCCCG
ATGCGGGCAG ATCGGCGCCA GTTGGAACAG GTGCTTATGA ACCTCGTTGT CAATGCACGG
GATGCGATGC CCGAAGGGGG GGAGATCACC ATCGAGGCCA AGAGCGTTGT CCTGGATAAC
CCGATAACGC GAGCGCGCGT CACGCTGCCC GCTGGCGACT ACGCATGTGT TACGGTCACG
GATCAGGGCA TCGGGATCCC GCAGGACAAG ATCACGAAGA TTTTCGAGCC GTTCTACACT
ACGAAACGAA CGGGGGAGGG TACCGGGCTG GGCCTGTCGA CCGCGTACGG GATCGTAAAG
CAGTCCGGTG GCTTCATTTT TGCTGAAAGC GTCGTCGGTA AGGGCACGGC GTTCGAGATC
TTTTTTCCAG CTTACCATGG ACAGACCGTC ATACCGACCG AAAGTACCGC CGCCCCGCCG
GAGCGGCCAG CCGCGACCGG GGACGGCGTC GTTCTGCTGG TTGAAGACGA AGCCCCGGTT
CGTGCTTTCG CTGCCCGTGC GCTTCGTCTG AACGGCTTTA CCGTGCTTGA GGCCGAAAAT
GCCGAGGCTG CCCTGGAGTT GTTGGAAAAT CCCGCGCTCG AGGTCGATTT GTTTGTGACA
GATGTCATCA TGCCCGGGCT TGATGGACCG AGCTGGGTGC GGCAGGCTCT CGCGCTGCGT
CCGGGTATCC CTGTTGTTTT CGTATCAGGC TACGCTGAAG ACCTGCTTTC CGGGGAAGAG
GATCCAATCC CGAATTCGGT TTTCCTGCCT AAGCCTTTTT CCCTGAAACA GCTGATCGCC
ACTGTGCAGA CGCAATCCGC GATGCGGGAT GGTGTGCTTT CGGTCAAAGA CGCGAGCTAA
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| Protein sequence | MSDQPLQGQS RRIFPGKGTR EAVLLLGSAA VISAVAILLQ DQTIRLSLAV SAITLVALLI
LLQLRARFAG TRIDPKLVAL FPFLEGDSAP SIVVDPDQQV LWANGAAKAQ FPALADVGIV
ASVESVMPDA SGLLRRLRRG LERGSMSIED VAVRQGHARF ALRSYASGQM LFRMEALATR
GGNGGGSGSV PVLTVSQTGT VLSMNDALRR MIGIRARDLT AVFVTPPTDT ASTAEIITPD
GHVTVYLQQT SLSAGRREIA MIPIENLSSV HDLKTGLEEL PVAVLKLGVD GQLLQANASA
RSLLSIDHID PDMNFANLVT GLGRSVRSWL EDALHAHHPL QPEVLRVRDR TEESFLQVSL
MRSQSAEGPV LTAVLHDATE LKTLEAQFVQ SQKMQAIGQL AGGVAHDFNN LLTAISGHCD
LLLLRHDQGD PEYGDLVQIN QNANRAASLV GQLLAFSRKQ TLQPELIDLR DTLSDLTHLL
NRLVGERVSL TLMTDPDLSP MRADRRQLEQ VLMNLVVNAR DAMPEGGEIT IEAKSVVLDN
PITRARVTLP AGDYACVTVT DQGIGIPQDK ITKIFEPFYT TKRTGEGTGL GLSTAYGIVK
QSGGFIFAES VVGKGTAFEI FFPAYHGQTV IPTESTAAPP ERPAATGDGV VLLVEDEAPV
RAFAARALRL NGFTVLEAEN AEAALELLEN PALEVDLFVT DVIMPGLDGP SWVRQALALR
PGIPVVFVSG YAEDLLSGEE DPIPNSVFLP KPFSLKQLIA TVQTQSAMRD GVLSVKDAS
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