Gene Dshi_1603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1603 
Symbol 
ID5712747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1667361 
End bp1667783 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content63% 
IMG OID641267518 
Productputative thioesterase superfamily protein 
Protein accessionYP_001532946 
Protein GI159044152 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism 
TIGRFAM ID[TIGR00369] uncharacterized domain 1 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.322772 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.911093 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTCA AGATGGATGG ACCCGCGCTG GAAGGGTTTC TGCAAGAGGC CTTTCCGCAA 
GTCGCCGAGG ATTTCCGCAT CGAAGAGGTC GCAGCAGAGC AAATGCGCGT GCGCCTCGTG
ATAACCGAGA AACATCTGCG CCCCGGCGGG ACCGTGTCGG GTCCCTCGAT GTTCGCACTG
GCGGACGTCG CGCTTTACCT GATGGTGCTG GCGCGGCTTG GGCCCGTCGC TTTGGCGGTG
ACCACCAACT GCAACATCGA CTTCATGCGA AAGCCGGCGG CGGGAAAGGA CCTGATTGGC
GAGGCGCGCC TGCTCAAGCT CGGGCGCAGC CTTGCGGTGG GCGATGTGCT GATCCGCTCG
GAAGGCTCCA AGGCTGTCGT GGCGCGGGCT TCGCTGACCT ATTCGATTCC GCCTTCGAAC
TGA
 
Protein sequence
MSVKMDGPAL EGFLQEAFPQ VAEDFRIEEV AAEQMRVRLV ITEKHLRPGG TVSGPSMFAL 
ADVALYLMVL ARLGPVALAV TTNCNIDFMR KPAAGKDLIG EARLLKLGRS LAVGDVLIRS
EGSKAVVARA SLTYSIPPSN