| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1545 |
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| Symbol | |
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| ID | 5713202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1606867 |
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| End bp | 1608687 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267460 |
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| Product | putative extracellular solute-binding protein |
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| Protein accession | YP_001532888 |
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| Protein GI | 159044094 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.134516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0971522 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAC TCCGCCGCGC AATCCGCATT GGCCACGCCG CCCTCATCGC CGGTTTCCTC
GCCGTCCCCG GCGCGCTCGC CGCGCCCTCC CATGGCATCG CTATGTATGG CGACCCGGCC
CTTCCACCGG ATTTTGTGTC TCTCCCCTAC GCCAACCCCG ATGCGCCCAA GGGCGGCCGG
ATCGTTCTGG GCGAGGTCGG CGGCTTCGAC AGCCTCAATC CCCACATCCT CAAGGGGCGC
GTCCCGTGGC AGCTCAGATT TCTCGCCCAT GAGAGCCTGA TGGCCCGAAA TTACGACGAG
CCCTTCGCAC TTTACGGGCT TCTGGCCGAA TCGGTGGAGG TCGACCCGGA CGGGCTCTGG
GTCGCCTTCA CCCTGCGCCC CGAGGCGCGA TTCTCCGATG GCAGCCCGGT GACGGTCGAG
GATGTGCTGT GGTCGTTCGA AACCCTCGGC ACCGTCGGCC ACCCGCGCTA TCTCGGCGCC
TGGGCGCAGG TGCAATCCGC CGAAGCCACC GGACCCCGCT CCCTGCGCAT CACCTTCACC
GAACCCAACC GCGAACTGGC GCTTATCATG GGCATGCGTC CGATCCTGAA AAAGGCCCAG
TGGGAGGGCA AGGATTTCGC CGAAAGCGGG CTGGACGAAG CCCCGATCTC CTCCGCGCCT
TACGTGATCG CGGATTTCGA GCCGGGCCGC TTCGTCACCC TGCGCCGCAA TCCCGATTAC
TGGGCCGCCG ACCTGCCCAT CCGGCGGGGG GTCCACAATC TCGACGAGAT CCGGATGGAA
TTCTTCGGCG ATGCCGGTGT GATGTTCGAG GCGTTCAAGG CCGGCATCCT CACCTCGATC
CGCGAGACCA ACACCGCCAA ATGGAACCGC GACTACGACT TTCCGGCCAT GCAGGCGGGC
GAGGTAGTCA AATCCGTCAT CCCGCATGAA CGCCCCTCGG GCATCACCGG CTTTGCCATG
AACACCCGCC GCGCCGATTT CGCCGATTGG CGCGTGCGCG ATGCCCTGAT CCACGCCTTC
AATTTCGAGC TGATCAACCG CACCCTCAAT GGTGCCGAGG TGCCGCGCAT CACCTCCTAT
TTCTCCAACT CCGTGCTGGC GATGCAGGAC GGCCCCGCCA CGGGCCGGGT GGCCGAGCTG
CTCGCCCCCT ACGCCGACAC ACTGCCCCCC GGCGCGCTGG AGGGCTACAC CCTGCCGGTC
TCCGACGGCT CCGAGGCCAA CCGCCGCAAC ATCCGCGCCG CCCTGCGCCT GATGGACGAG
GCCGGTTACA CCATCGAGGA AGGCGTGATG ACCCGCCCCG ACGGCACCCC CTTCACCTTC
GAGATCCTCC TGTCCCAGGG CAGCTCCGAA GTGCAGTCCA TGATCAACAT CTACGCCAAG
TCCCTCGAAC GGCTGGGCGT TTCCGTGGAC ATCACCACCG TCGACAGCGC TCAGTACCGC
GAGCGCACCG ATGCCTACGA TTTCGACATG ACCTACTACA CCCGCGGCCT GTCGCTCAGC
CCCGGCAACG AGCAGCGGCT CTATTGGGGC TCGGAGGGCG TGGACATCCC CGGCAGCCGC
AACTGGCCCG GCATCGACAG TGCGGCGGTG GACGGGCTGA TCGACGCCAT GCTGAGTGCC
AAGAGCCAGG AGGACTACAT CGCCACCGTG CGCGCGCTCG ACCGGGTGCT GACCGCGGGA
CGCTATGTCA TCCCGATCTG GTTCAACCCG GTCTCCCGCA TCGCGCACGC GGCCGATCTG
ACCTACCCGG AAGCCTTGCC CGCCTATGGC GACTGGATCT CGTTTCACCC GGATGTGTGG
TGGTCGAAAT CCGCCGAATG A
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| Protein sequence | MKQLRRAIRI GHAALIAGFL AVPGALAAPS HGIAMYGDPA LPPDFVSLPY ANPDAPKGGR
IVLGEVGGFD SLNPHILKGR VPWQLRFLAH ESLMARNYDE PFALYGLLAE SVEVDPDGLW
VAFTLRPEAR FSDGSPVTVE DVLWSFETLG TVGHPRYLGA WAQVQSAEAT GPRSLRITFT
EPNRELALIM GMRPILKKAQ WEGKDFAESG LDEAPISSAP YVIADFEPGR FVTLRRNPDY
WAADLPIRRG VHNLDEIRME FFGDAGVMFE AFKAGILTSI RETNTAKWNR DYDFPAMQAG
EVVKSVIPHE RPSGITGFAM NTRRADFADW RVRDALIHAF NFELINRTLN GAEVPRITSY
FSNSVLAMQD GPATGRVAEL LAPYADTLPP GALEGYTLPV SDGSEANRRN IRAALRLMDE
AGYTIEEGVM TRPDGTPFTF EILLSQGSSE VQSMINIYAK SLERLGVSVD ITTVDSAQYR
ERTDAYDFDM TYYTRGLSLS PGNEQRLYWG SEGVDIPGSR NWPGIDSAAV DGLIDAMLSA
KSQEDYIATV RALDRVLTAG RYVIPIWFNP VSRIAHAADL TYPEALPAYG DWISFHPDVW
WSKSAE
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