Gene Dshi_1544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1544 
Symbol 
ID5713201 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1605788 
End bp1606561 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content64% 
IMG OID641267459 
Productshort-chain dehydrogenase/reductase family protein 
Protein accessionYP_001532887 
Protein GI159044093 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0575047 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.138596 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTGA AGGGAAAAAC CGCCGTTATC ACCGGGTCGA ATTCGGGGAT CGGGTTGGGG 
ATTGCGTGGG AGTTGGCCCG CGCGGGTGCG GATGTAGTGC TCAACAGCTT CACCGACCGG
GAGGAGGATC ACGCCCTAGC CGACGAGATC GCCCGCGAGA CCGGGGTTTA TGCGCGCTAC
ATCAAGGCGG ACATGTCCAA GGGCGACGAC TGCCGGGCGC TGATCGAGAG CGCGGGTACC
TGCGATATCC TGGTGAACAA TGCGGGTATC CAGCATGTGG CCCCGATCGA CGAGTTTCCG
GTCGACAAGT GGGACGCGAT CATCGCGATC AACATGAATT CGGCGTTCCA CACCACCGCC
GCCGCCCTGC CGATGATGCG CAAGGCGGGC TGGGGGCGGG TCGTCAATAT CGCCTCGGCG
CACGGACTGA CCGCGTCGCC CTACAAGGCG GCCTATGTGG CGGCCAAGCA CGGAGTGGTG
GGCATGACCA AGACCGTGGC GCTGGAGACC GCGCAGGAGC CGATCACCTG CAACGCGATC
TGCCCGGGCT ATGTGCTGAC CCCGCTGGTG GAGGCGCAGA TCCCTAACAC GATGGAGAAA
TACGATATGG GCCGCGAGGA GGTCATCAAG CAGGTGATGC TGGAGCGCCA GCCGTCGAAG
GAATTCGCGA CCGTCGAGCA GTTGGGCGGC ACCTGCGTGT TCCTGTGCTC GGATGCGGCG
GCACAGATCA CCGGGACGAC GATTTCGGTG GATGGCGGCT GGACCGCGCT CTGA
 
Protein sequence
MSLKGKTAVI TGSNSGIGLG IAWELARAGA DVVLNSFTDR EEDHALADEI ARETGVYARY 
IKADMSKGDD CRALIESAGT CDILVNNAGI QHVAPIDEFP VDKWDAIIAI NMNSAFHTTA
AALPMMRKAG WGRVVNIASA HGLTASPYKA AYVAAKHGVV GMTKTVALET AQEPITCNAI
CPGYVLTPLV EAQIPNTMEK YDMGREEVIK QVMLERQPSK EFATVEQLGG TCVFLCSDAA
AQITGTTISV DGGWTAL