Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1544 |
Symbol | |
ID | 5713201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1605788 |
End bp | 1606561 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641267459 |
Product | short-chain dehydrogenase/reductase family protein |
Protein accession | YP_001532887 |
Protein GI | 159044093 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0575047 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.138596 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGCTGA AGGGAAAAAC CGCCGTTATC ACCGGGTCGA ATTCGGGGAT CGGGTTGGGG ATTGCGTGGG AGTTGGCCCG CGCGGGTGCG GATGTAGTGC TCAACAGCTT CACCGACCGG GAGGAGGATC ACGCCCTAGC CGACGAGATC GCCCGCGAGA CCGGGGTTTA TGCGCGCTAC ATCAAGGCGG ACATGTCCAA GGGCGACGAC TGCCGGGCGC TGATCGAGAG CGCGGGTACC TGCGATATCC TGGTGAACAA TGCGGGTATC CAGCATGTGG CCCCGATCGA CGAGTTTCCG GTCGACAAGT GGGACGCGAT CATCGCGATC AACATGAATT CGGCGTTCCA CACCACCGCC GCCGCCCTGC CGATGATGCG CAAGGCGGGC TGGGGGCGGG TCGTCAATAT CGCCTCGGCG CACGGACTGA CCGCGTCGCC CTACAAGGCG GCCTATGTGG CGGCCAAGCA CGGAGTGGTG GGCATGACCA AGACCGTGGC GCTGGAGACC GCGCAGGAGC CGATCACCTG CAACGCGATC TGCCCGGGCT ATGTGCTGAC CCCGCTGGTG GAGGCGCAGA TCCCTAACAC GATGGAGAAA TACGATATGG GCCGCGAGGA GGTCATCAAG CAGGTGATGC TGGAGCGCCA GCCGTCGAAG GAATTCGCGA CCGTCGAGCA GTTGGGCGGC ACCTGCGTGT TCCTGTGCTC GGATGCGGCG GCACAGATCA CCGGGACGAC GATTTCGGTG GATGGCGGCT GGACCGCGCT CTGA
|
Protein sequence | MSLKGKTAVI TGSNSGIGLG IAWELARAGA DVVLNSFTDR EEDHALADEI ARETGVYARY IKADMSKGDD CRALIESAGT CDILVNNAGI QHVAPIDEFP VDKWDAIIAI NMNSAFHTTA AALPMMRKAG WGRVVNIASA HGLTASPYKA AYVAAKHGVV GMTKTVALET AQEPITCNAI CPGYVLTPLV EAQIPNTMEK YDMGREEVIK QVMLERQPSK EFATVEQLGG TCVFLCSDAA AQITGTTISV DGGWTAL
|
| |