Gene Dshi_1528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1528 
Symbol 
ID5713185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1589674 
End bp1590558 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content67% 
IMG OID641267443 
Producthypothetical protein 
Protein accessionYP_001532871 
Protein GI159044077 
COG category[S] Function unknown 
COG ID[COG1561] Uncharacterized stress-induced protein 
TIGRFAM ID[TIGR00255] conserved hypothetical protein TIGR00255 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.214783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.106302 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGGTT TCGCCACCCG GGAAGGCAGT TTCGAGGACT GGACCTGGAC CTGGGATATC 
CGCGCCGTGA ACGGTCGCGG GCTCGACGTG AAACTGCGCC TGCCGGACTG GCTGCCCGGG
CTCGACCGCG CCGTCCGCGC CCGGATCGCG AAGGCCGCAA AGCGTGGCAA CATCTCCGTC
GCCCTGCGCC TCAATCGCGC CTTCGGCAGC GGTCAGAGCG TGAATGCCGA AGCGCTCGAC
GCTGCCCTGC GCGCCCTGTC GGACCTGACG CTGCGCGCCG ATCAGGCGGG GGTGCAGCTG
TCGCCTCCCA ATGCACTGGA TTTGCTGAAC TTTCGGGGCA TATCCGAGAC CGCGCCCCTG
TCCGACGAGG CGCTTTCATC GCTGCAAGCC GCGCTGCTGG TTGACCTCGA CGCCGCCTTG
CCGGCCTTTG TCGAGAGCCG CGAGCGCGAA GGGGCCGCCA CCGCGGCGGG GCTGACCGAG
GCGCTGGACC AGGTCGCGGG GCACCTTGCC ACCGCGCGCC GTCTTGCCAA GGCCCGGCGC
GACACCCAGG CCAGCCGCCT TAAAACCGCC ACCGCGCAAA TCCTCGAAGC CGCGGGCGAA
GGCGCGCCGG ACCCCCAGCG CATCGCCCAG GAACTGGCCC TTCTGTTCGT AAAGGCTGAC
GTTGCGGAAG AGTTGGACCG CCTCGACACC CATGTCTCCA GCGCCTGCGA AATCCTTAAC
GCGGACGCCT CCATGGGCCG CAAGCTGGAC TTTTTGATGC AGGAATTTAA CCGTGAGGCG
AACACGCTCT GCTCGAAATC CGCCGATGCC GCGCTGACGC AGGTGGGGCT GGATCTCAAG
GTGCTGATCG ACCAGATGCG CGAACAGGTC CAGAACCTCG AATAG
 
Protein sequence
MTGFATREGS FEDWTWTWDI RAVNGRGLDV KLRLPDWLPG LDRAVRARIA KAAKRGNISV 
ALRLNRAFGS GQSVNAEALD AALRALSDLT LRADQAGVQL SPPNALDLLN FRGISETAPL
SDEALSSLQA ALLVDLDAAL PAFVESRERE GAATAAGLTE ALDQVAGHLA TARRLAKARR
DTQASRLKTA TAQILEAAGE GAPDPQRIAQ ELALLFVKAD VAEELDRLDT HVSSACEILN
ADASMGRKLD FLMQEFNREA NTLCSKSADA ALTQVGLDLK VLIDQMREQV QNLE