| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1490 |
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| Symbol | |
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| ID | 5712669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1548941 |
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| End bp | 1550608 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267405 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_001532833 |
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| Protein GI | 159044039 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.758744 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGT CCACCATCAA CGGCAAACCC ATGCATCCGG CGGTCGCAAC CTACGCCCAG
GACTGCCGCA CCGGCACGCT CAGCCGCCGC GAATTCCTGT CCTACGCCAC TGCCCTCGGC
GCCACCTCCG TCGCCGCCTA CGGCATGATC GGGGCCAAAC CGGCCCGCGC GATGACCGCC
ACACCGGCCC AGGGCGGCAC GCTGCGCATC CAGCACCTGG TCAAGGCGAT GAAGGAGCCG
CGGACCTATG ACTGGTCCGA GCTTGGCAAC CACTCCCGCG GGTTCCTCGA ATATCTCGTG
GAATACAATG CCGACGGAAC CTTCCGCGGC ATGCTGCTGG AAAGCTGGGA AGTGAACGAC
GACGCCACCG TCTATACCCT CAACGTCCGG CCCGGCGTGA CCTGGAACAA CGGCGACGCC
TTTACCGCCG AGGACGTGGC GCGCAACATT ACCGGCTGGT GCGACAGCTC GCTCGAAGGC
AACTCCATGG CCACCCGCGT GCAGGGGCTG ATCGACGAAG CCACCGGCCA AGCCCGGGAG
GGCGCGATCG AGATCGTCGA TGACATGACC GTGCGCCTGA CCCTCAGTGC GCCCGACATC
ACCCTGATCG CCACCATGTC CGACTACCCC GCCGCGATCA CCCATGCCAG CTACGAGGGC
GGCAACCCGT TCGACCACGG CATCGGCACC GGCCCCTATC GCCCGGTCAG TTTCGAGGCG
AACGTGCGCG CCGTGCTGGA ACGCGCCACC GACCACACCT GGTGGGGCAC CGAGGTCTAT
GGCGGCCCCT ATGTCGACCG GATCGAGTTC GTCGATTTCG GCACCGACCC GGCCACCTGG
CTGGCGGGCG CCGAGGCCGA GGAATTCGAC CTGACCTACG AGACCACCGG CGAGTTCGTC
GACATCTTCA GCGCCATCGG TTGGTCCGTC ACCGAGGCCG TGACCGGCGC CACCGTCGTG
TGCCGTCCCA ACCAGGCCGC CGAGATCGAC GGCGTGACGC CCTATGCGGA CGTGAACGTG
CGCCGGGCGC TTGCGATGGC CGTGGATAAC AGCGTGCTGC TGGAGCTGGG CTACAACAAC
CAGGGCACCG CGGCGGAAAA TCACCATGTC TGCCCGATCC ATCCGGAATA CGCCGATATC
GGCGCGCCGG AAACGGACCC GGCCAAGGCC AAGGAGATGA TCGACGCCGC CGGCCTGGGC
GATTTCACCC ACACCTTCAT CACCCCCGAT GAAGAGTGGC TCGCCAATAC TGGCGCCGCC
CTGACCGCGC AGCTGCGCGA CGCGGGCATC CAGGTCGATC ACCGCATCCA GCCCGGCGCC
ACCTTCTGGG GCGACTGGAC CAAGCATGCG TTCTCGGCCA CCTCCTGGAA CCACCGGCCC
CTGGGCGTGC AGATCCTGGC ACTGGCCTAC CGCTCGGGCG AGGCATGGAA CGAATCCGCC
TATGCCAACC CGGAGTTCGA CGCGGCCCTC GCCGAGGCCC TGGCCATCGC CGATGCCGAC
AAGCGCCGCG AAGTCATGGG CAAGGTGCAG CAAATCCTGC GCGACGACGG CGTGATCATC
CAGCCCTACT GGCGGTCGCT CTACAACCAC CACCGGGGCG ACGTGGTCAA TGCCGAGAAG
CATCCGAGCC ACGAGATCCA CGTCTACAAG CTCGGCTTCG CGGCCTGA
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| Protein sequence | MTMSTINGKP MHPAVATYAQ DCRTGTLSRR EFLSYATALG ATSVAAYGMI GAKPARAMTA
TPAQGGTLRI QHLVKAMKEP RTYDWSELGN HSRGFLEYLV EYNADGTFRG MLLESWEVND
DATVYTLNVR PGVTWNNGDA FTAEDVARNI TGWCDSSLEG NSMATRVQGL IDEATGQARE
GAIEIVDDMT VRLTLSAPDI TLIATMSDYP AAITHASYEG GNPFDHGIGT GPYRPVSFEA
NVRAVLERAT DHTWWGTEVY GGPYVDRIEF VDFGTDPATW LAGAEAEEFD LTYETTGEFV
DIFSAIGWSV TEAVTGATVV CRPNQAAEID GVTPYADVNV RRALAMAVDN SVLLELGYNN
QGTAAENHHV CPIHPEYADI GAPETDPAKA KEMIDAAGLG DFTHTFITPD EEWLANTGAA
LTAQLRDAGI QVDHRIQPGA TFWGDWTKHA FSATSWNHRP LGVQILALAY RSGEAWNESA
YANPEFDAAL AEALAIADAD KRREVMGKVQ QILRDDGVII QPYWRSLYNH HRGDVVNAEK
HPSHEIHVYK LGFAA
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