| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1486 |
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| Symbol | |
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| ID | 5712665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1542296 |
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| End bp | 1544161 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267401 |
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| Product | BCCT transporter |
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| Protein accession | YP_001532829 |
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| Protein GI | 159044035 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.352769 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGTCA AACCGCCGGT CACAGACCTG CCAATTCGAA CCGCCGACAG CGGATTTTAC
AAGGGCTTCA CCAAGGACGT CGCGATCACC GGGAAACTCC TGGTCGGCGG GCTGATCCTC
TGGGCCATCG CCTTCCCGGA CCAGGCCGCC AGCGTGCTCG GCGCGCTGAA CTCGATCATC
TTGGCCACAT TCAACATCTG GTACGTCTAC ACGATGGCGT TCTTCGTCAT CCTGTGCTTC
GCGCTGGCGC TCTGGCCCAC GGCGGGCAAG CTGCGGCTGG GGCACGACGA TGACAGGCCA
GAATTTTCCA ATTTCTCGTG GTTCTCGATG ATGTTCGGCG CGGGGATCGG GATCGGGATG
CTGACCTTCG CAACCGCCGA ACCGATGTAC CATTTCGGCG CGAACCCGGC CACGATCATG
GGCGACACCG AAGGCTCGAC CGCCGGAAAC GTGCGCGACG CCTATATCTG GTCGTTCACC
CATTGGGGCC TCGCGGCCTG GGCGTCCTAC GCCATCGTGG GCCTGGCCTT GGGCTATTTC
TGCTACCGGC GCGGCCTGCC GCTCACGATC CGCTCGGCGC TCACGCCGAT TTTCGGCAAC
AAGCTCTCGG GCCCCGTGGG GCATGTGGTG GATATCGTGG CCGTCGTGGC GACCGTGCTC
GGCGTGTCCC AGACCCTAGG TTTCGGGGTC GAACAATTCA TCGCCGGTCT CAGCCGGATC
GGCGTCGGCG ACTGGCTCTA CACGGCCACG GCCGATGGGG GGCAGACCTC CTCGACCATG
GGGATCATCG TCGCCCTGTG CGTGATCATG GGCCTGTCGA CCCTGTCTGC GCTCTCGGGC
GTGGGCAAGG GCATCAAGTG GCTGTCGAAC CTCAACATGG GGCTCAGCTT CTTCGTGCTG
ATCTTCTTCC TGATCTTCGG CTCGACCTTC TTCGGTCTGC AAACCCTGTT CGTGGGCATG
TTCGACTACC TGGTGTCGAT CCCCGGCAAT ATCTTCACGG TCTGGGTCGG GGCACCGGCC
GAGGCGATCA TCGCCAGCGT ACCGGCGTCG GTGCAGGCCC TGCCGGCCGA GGATCTCGCC
GCCATGGTCG AGAGCGCGAC CAGCCCCTGG GGCACCCTCG CGTCCTTCAC CGAGGGGCTT
CCGGCCAGCG CCGCGGCCCT GCCCGCAGCC GACATCGCGG CGGTCTATGC CGCGGCGACC
GAGAATCGCC TGTCGGGCTG GCAAGGGGCC TGGACGATCT TCTACTGGGC CTGGTGGATC
GCGTTCGCGC CCTTCGTGGG CGTGTTCCTG GCGCGCATCT CCAAGGGCCG CACGGTGCGT
GAATACGTGC TGGGCGCGAT GATCATCCCG GCGATCATGT GCTTTGTATG GTTCGCCCTC
GTGGGCGGCA CGGCGATCGA CCTCGAACTT CGCGGCGTGG CCGATGGCGC GATCCAGGGG
GCGGGTCAGG CTGACCAGCT CTTCGCGATG CTGGCGGTGA TGCTGTCCGA GGGGCTGGCC
TATGCCATGT CAGTGCTGAT CGTGATCCTG CTCTTGACCT ACCTGGTGAC CTCTGCCGAC
AGCGCGGTGC TGATCATCAA CACGATCAAC GCCGCGGGCG ACGAGGGTCC CAAGGCCCGC
CCGCATATCC TGTTCTGGGG CGCGGCCCTG GCGCTGGTGG TGGGCGGTCT GATCATCGCG
GGCGGCCTGG GCGCGATCCA GACGGCCATG GTGATCGGGG CGCTGCCCTT CTCGGTGGTG
ATGGTCCTGA TGGGCCTGTC CCTGATCAAG GCGGTCTACC GCGACGGGCT GCGGCTCAAG
CACGGGCTGC CCGCCACCCA TGTGGAGCCG GCGGACACGG ACGCCGCCCC CACCCCCGCG
GAATGA
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| Protein sequence | MPVKPPVTDL PIRTADSGFY KGFTKDVAIT GKLLVGGLIL WAIAFPDQAA SVLGALNSII
LATFNIWYVY TMAFFVILCF ALALWPTAGK LRLGHDDDRP EFSNFSWFSM MFGAGIGIGM
LTFATAEPMY HFGANPATIM GDTEGSTAGN VRDAYIWSFT HWGLAAWASY AIVGLALGYF
CYRRGLPLTI RSALTPIFGN KLSGPVGHVV DIVAVVATVL GVSQTLGFGV EQFIAGLSRI
GVGDWLYTAT ADGGQTSSTM GIIVALCVIM GLSTLSALSG VGKGIKWLSN LNMGLSFFVL
IFFLIFGSTF FGLQTLFVGM FDYLVSIPGN IFTVWVGAPA EAIIASVPAS VQALPAEDLA
AMVESATSPW GTLASFTEGL PASAAALPAA DIAAVYAAAT ENRLSGWQGA WTIFYWAWWI
AFAPFVGVFL ARISKGRTVR EYVLGAMIIP AIMCFVWFAL VGGTAIDLEL RGVADGAIQG
AGQADQLFAM LAVMLSEGLA YAMSVLIVIL LLTYLVTSAD SAVLIINTIN AAGDEGPKAR
PHILFWGAAL ALVVGGLIIA GGLGAIQTAM VIGALPFSVV MVLMGLSLIK AVYRDGLRLK
HGLPATHVEP ADTDAAPTPA E
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