| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1413 |
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| Symbol | |
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| ID | 5712589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1466558 |
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| End bp | 1467793 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267325 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_001532756 |
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| Protein GI | 159043962 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.127019 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.973051 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCA TCAAAACCGG ATTTTTGCCC GCAGCGATTC TGGCCGTGGG GATCGGCGGG
GCGTCGGCCT GCGAGCTGGC CGAAGGCTCC GTGCGCATCC TGTCCAACGA TTTCCCCGCC
CTGCAGGCCG TTACCGGCGC GGCGGCGGCC TGTGCCACGG GCGGGGCGAC GGTGACGGCG
AACCTGACGA CCGAGCACCG CAACATCCAG GTGGCGGCCC TGACCGCGGA TCCGGCGGAA
TATACCTCGG CCGTGGTGTC GAATTCGAGC CTCGTGCCGC TGCTGACCGA CGGGCTGGTG
CGGCCGCTGG ACGATCTGAT CGCGGCCCAT GGGGCGGGGG TGTCGCCGAA CCAGAAGATC
ATGATCGACG GGCGCACCAT GGCGATCGCC TTCATGGCCA ATGCGCAGCA CCTCTATTAT
CGGCGCGACA TCCTGGAGGC GGCGGGGCTG GAGGTGCCGA CGACCTATGA GGAGGTGCTC
GCCGCGGCAG AGGCGATCCG CGACCAGGGG CTGATGGAAT TTCCCCTCGG CGGGACGTTC
AAGGCGGGCT GGAACCTGGC CCAGGAATTC GTGAACATGT ATCTCGGCCA TGGTGGGGCG
TTTTTCGAGC CCGGCTCGGC GGCCCCGGCG ATCAACAATG CCCAAGGGGT TGCGGCGCTG
GAGATGATGA AGGCGCTGAC CGCGTACATG AACCCGGATT TTCTCACCTA CGATTCCAAT
GCCTTGCAGG CCGAATTTGA AGCAGGAAAC GTGGCGCTGG CCAATTTCTG GGGCTCGCGG
GCCGGCGGCG TGACCGATGC GGAGGGCGCG ACCCCCGAGA TCGCGGCGGC CATCGGGTTC
GCGGCGGCCC CCACGGTGGC GGGGGGCACG ACGCCGGCGT CGACCCTGTG GTGGGACGGG
TTCACCATCG CCACCAACAT CCCGGACGTG GATGCGGAGG CGAGCTTCGT CGCCATGGTC
CACGGCGCCT CGACCGAGGT GGCCAATGCC AATCCCAACG CGGCGGTCTG GCTGATCGAC
GGCTACACCC CGGGCGACGC GGCGGTGGGC GTTCTGGCTA CGGCGCAGAT GGGCACGTCG
CCCTATCCGA TGCTGCCCTA TATGAGCCTG ATGCACACCG CGCTCGGCAC CGAGATCGTC
GAGTTCCTGC AAGGCAGCGA GACGGCGGAA CAGGCCCTGT CGGATGTGGA GGCGTCCTAC
AGGGCGGCCG CGCGCGAAGC GGGCTTTCTG AACTGA
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| Protein sequence | MNFIKTGFLP AAILAVGIGG ASACELAEGS VRILSNDFPA LQAVTGAAAA CATGGATVTA
NLTTEHRNIQ VAALTADPAE YTSAVVSNSS LVPLLTDGLV RPLDDLIAAH GAGVSPNQKI
MIDGRTMAIA FMANAQHLYY RRDILEAAGL EVPTTYEEVL AAAEAIRDQG LMEFPLGGTF
KAGWNLAQEF VNMYLGHGGA FFEPGSAAPA INNAQGVAAL EMMKALTAYM NPDFLTYDSN
ALQAEFEAGN VALANFWGSR AGGVTDAEGA TPEIAAAIGF AAAPTVAGGT TPASTLWWDG
FTIATNIPDV DAEASFVAMV HGASTEVANA NPNAAVWLID GYTPGDAAVG VLATAQMGTS
PYPMLPYMSL MHTALGTEIV EFLQGSETAE QALSDVEASY RAAAREAGFL N
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